Parental gene:

PTCD2, ENSSTOG00000006596

Aliases:None
Description:pentatricopeptide repeat domain 2 [Source:HGNC Symbol;Acc:25734]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393359.1:4135808..4164975(-)


>ENSSTOG00000006596
GCCCGGGACAATATGGCTGCATTTCGGTCCTTGGAACGAGCTCTGCAGCAAACGACACGGACTTCTTTTTATCCCGGGGT
GGAAGCCGCAGGCTCCAACTGCTGCCGGTGCCCACTCGGAGCTAAAAGGTATCTACTTACAGATAATATCATGAAATTAA
AAGAATTTCAACATAAGAAGTTGGCTATTGCATATAATCTTCCTGACACCAAAGAAACCTATTTTAGAAACTTGGAAGAG
AAATTGACCCAGAACAAACTCATCTTGAAGGACGAGTTGAGAACTTTGCTTCATTTGTGTCAGACCCGGGATGATGTGGA
GCTGGCTAAAAATGTCATGTACAGGTACCATACAGAGAACAGAAATGTCACTTTGGGGGAATATAAGTTTGGACCTGTTT
TCATGAGGCTGTGTTATGAGTTGGATCTTGAGGAGTCTGCAGTGGAGCTCATCAAAGACCAGCATTTACATGGTTTCTTC
TCAGACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAATGCCTTGGAAGTGTTGAT
AGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGACACCTATGTCCTTGCGTTTGCAATTTGCTACAGACTGAATAGCC
CAGAGTCTTTTAAAATCTGTACTACATTAAGAGAAGAAGCCCTAATCAAAGGAGATGTTCTTTCCAGGAGAGCCTCCTGC
TTTGCAGTGGCGTTAGCTCTGAACCAGAACCAGGTAGCAAAAGCTGCATCCATTTTTTCTCAAATCATGAATCCAGAGAA
CATAACTTGCACAAATTTAAATATTATTATCCATATCCAGTCAAATATGGTGGAAACCCTGATAGATATACTAACGAATG
CTGCAGAAGGAAATTTATCAATATTTGTGAAAAAACGTGTGTTCTCAGAGGAAGTGTTGGTCAAGGTGAGGGAAAAAGTG
AAGGATGATGCACCCAACCTTCTGGCCAAATTTGACGAGATCTATGGGAAATTGCACATAAATGGCCAGATCACCACTTA
TTCACTGGATACTCTGCTCTGCCGTACCCCCAGGGACAAGAAGTCCCATACATTGCTATTAAACAAGAGGACAATCAGCC
GTCGGACCTTCCAGCCCCTCAGCCAGTCCCTGTTGGCTGAGTAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016364 ortholog_one2one 1 retrogene
retro_cjac_1598,
Homo sapiens ENSG00000049883 ortholog_one2one 2 retrogenes
retro_hsap_1388, retro_hsap_607,
Gorilla gorilla ENSGGOG00000010695 ortholog_one2one 2 retrogenes
retro_ggor_1077, retro_ggor_534,
Macaca mulatta ENSMMUG00000017908 ortholog_one2one 1 retrogene
retro_mmul_2240,
Nomascus leucogenys ENSNLEG00000004516 ortholog_one2one 2 retrogenes
retro_nleu_2954, retro_nleu_436,
Otolemur garnettii ENSOGAG00000008390 ortholog_one2one 1 retrogene
retro_ogar_3169,
Pan troglodytes ENSPTRG00000016968 ortholog_one2one 2 retrogenes
retro_ptro_447, retro_ptro_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1469 90.00 100.00
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Download FASTA sequences of all ENSSTOG00000006596 retrocopies