RetrogeneDB ID: | retro_hsap_962 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:10264336..10265070(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255734 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPAB | ||
Ensembl ID: | ENSG00000197451 | ||
Aliases: | HNRNPAB, ABBP1, HNRPAB | ||
Description: | heterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:5034] |
Percent Identity: | 81.78 % |
Parental protein coverage: | 85.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GATAAPPSG--NQNG-AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG |
GATAAP.SG..NQ...AE..QINASKNEEDA.KM.VGGLSWDTSKKDLKDYF.KFGEV.DCTIKMDPN.G | |
Retrocopy | GATAAPSSGNQNQKS<AEDEQINASKNEEDAAKMLVGGLSWDTSKKDLKDYFPKFGEVIDCTIKMDPNIG |
Parental | RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFG |
R.RGFGFILFKDA..VEKVLDQKE.RLD.RVIDPKKAMAMKKDPVKKIF..GLNPEATEEKIREYFGEFG | |
Retrocopy | RARGFGFILFKDATNVEKVLDQKEYRLDVRVIDPKKAMAMKKDPVKKIFAEGLNPEATEEKIREYFGEFG |
Parental | EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR |
EIEAIE.P.DPKLNKR.GFVFITFK..EPVKKVLEKKFHT.SGSK.EI.VA.PKEVY.QQ.YGSG.RGN. | |
Retrocopy | EIEAIEIPVDPKLNKRQGFVFITFK-KEPVKKVLEKKFHTISGSKREITVA*PKEVYWQQRYGSGDRGNH |
Parental | NRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY |
NRGNRGS........QGSTNY.KSQ..GGHQN.YKPY | |
Retrocopy | NRGNRGSXXXXXXXXQGSTNYSKSQ*HGGHQNTYKPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 96 .67 RPM |
bodymap2_adrenal | 0 .02 RPM | 131 .11 RPM |
bodymap2_brain | 0 .00 RPM | 36 .03 RPM |
bodymap2_breast | 0 .00 RPM | 69 .53 RPM |
bodymap2_colon | 0 .00 RPM | 107 .68 RPM |
bodymap2_heart | 0 .00 RPM | 51 .71 RPM |
bodymap2_kidney | 0 .00 RPM | 95 .96 RPM |
bodymap2_liver | 0 .00 RPM | 65 .76 RPM |
bodymap2_lung | 0 .00 RPM | 91 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 87 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 115 .12 RPM |
bodymap2_prostate | 0 .00 RPM | 65 .57 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 77 .77 RPM |
bodymap2_testis | 0 .04 RPM | 80 .16 RPM |
bodymap2_thyroid | 0 .02 RPM | 79 .13 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 55 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_666 |
Pongo abelii | retro_pabe_821 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |