RetrogeneDB ID: | retro_itri_1004 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393358.1:2300170..2300789(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCCIP | ||
Ensembl ID: | ENSSTOG00000011828 | ||
Aliases: | None | ||
Description: | BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:978] |
Percent Identity: | 90.34 % |
Parental protein coverage: | 77.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LDEEVNIEFEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTNVSEDSDDDDADE |
.D.EVN.EFEAYSI.DNDYD.IKKLLQQLFLKAPVN.AELTDLLIQQNHIGSVIKQTNVSEDS.DDD.DE | |
Retrocopy | VDQEVNVEFEAYSITDNDYD*IKKLLQQLFLKAPVNAAELTDLLIQQNHIGSVIKQTNVSEDSNDDDVDE |
Parental | DEIFGFISLLNLT-ERKGTQCAEQIKELVLSFCEKNCEKSVVEQLDKLLNDTTKPVGFLLSERFINVPPQ |
DEIFGFISLLNLT.ERKGTQC.EQIKELVLSFCEKNCEKS.VEQLDKLLND.TKPVGFLLSERF.NVPPQ | |
Retrocopy | DEIFGFISLLNLT>ERKGTQCSEQIKELVLSFCEKNCEKSMVEQLDKLLNDITKPVGFLLSERFTNVPPQ |
Parental | IALPMHQQLQKELVESHKTNKPCGKCSFYLLISKTFVEAGKSNSKKKWSNQKDELMFVNAEEEFFYE |
IALPMH.QLQKEL.E.HKTNKPC.KCSFYLLISKTFVEAGKSNSKK.WSNQKDELMF.NAEEE.FYE | |
Retrocopy | IALPMH*QLQKELAETHKTNKPCEKCSFYLLISKTFVEAGKSNSKKRWSNQKDELMFINAEEECFYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012873 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012411 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002939 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008541 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008761 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010901 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011828 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000002570 | 4 retrocopies |