RetrogeneDB ID: | retro_itri_139 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393459.1:2196835..2197984(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022006 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000016395 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.75 % |
Parental protein coverage: | 59.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI |
Y..A.LYVGDL.PDVTE.MLY.KF.PAGP....R.CRD..TR..LGY.YVNF..PADAE.AL.TMNFD.I | |
Retrocopy | YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI |
Parental | KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFET |
.GKP.R.MWSQ.D..LRKSGVGNIFIKNLDKSIDN.AL...FSAFGNILSCKVVCD.NGSKGY..VHF.. | |
Retrocopy | NGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDS |
Parental | QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-EFTNVYIKNFGEDMDDERLKDLFGKFGP |
..AA.RAI..MNG..LN.R.V.VGRFK...ER.AE...R....FTNV..KNFG.DMDDE.LK.LF...GP | |
Retrocopy | LAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGP |
Parental | ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD |
..SVKV..D.SGKSKGFGFV..E.HE.AQKAV....GK...GK..YVGRAQKK.ER..EL.R.FE..... | |
Retrocopy | TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLK |
Parental | RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR |
...R..GV..Y.KNLD..IDDE.L..EFS.FG.I..AKVMME.G..KGFG.VCFSS.EEATKAV.EMNGR | |
Retrocopy | EKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGR |
Parental | IVATKPLYVALAQRK |
.V..KPL.V.L.Q.. | |
Retrocopy | VVGSKPLHVTLGQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015833 | 5 retrocopies | |
Homo sapiens | ENSG00000070756 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017786 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006222 | 4 retrocopies | |
Mus musculus | ENSMUSG00000022283 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004354 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018790 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008639 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011267 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016395 | 2 retrocopies |
retro_itri_139 , retro_itri_48,
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