RetrogeneDB ID: | retro_itri_48 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393491.1:1822742..1823855(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000019472 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000016395 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.43 % |
Parental protein coverage: | 59.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI |
Y.MASLYVGDLH.DVTE..L..KFS..GP.LSIR.CRD..TR.SLGYAYVNF.Q.ADA..ALDTMNFD.I | |
Retrocopy | YRMASLYVGDLHVDVTEDLLFRKFSAVGPVLSIRICRDAVTRLSLGYAYVNFLQLADAQKALDTMNFDTI |
Parental | KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFET |
KGK..R.MWSQRD..LRKSGVGN.FIKNLDKSIDNK.L...FSAFG.ILS.KV..D..GSKGYGFVHF.. | |
Retrocopy | KGKSIRLMWSQRDAHLRKSGVGNVFIKNLDKSIDNKTLHEHFSAFGKILSSKVMSDDQGSKGYGFVHFQN |
Parental | QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA-KEFTNVYIKNFGEDMDDERLKDLFGKFGP |
Q.AAE.AIE.MNG.LL.D..VFVGRFK.RKEREAEL...A..EFTNVYIKNFG.DMDDERLK..F.K.G. | |
Retrocopy | QSAAEKAIEEMNGKLLKDCRVFVGRFKNRKEREAELRSKASSEFTNVYIKNFGDDMDDERLKEVFSKYGH |
Parental | ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD |
.LSVKVM.D.SGKSKGFGFVSFE.H..AQKAV.EMNGK..NG....VGRAQKK.ERQ.ELK..FEQ.K.. | |
Retrocopy | PLSVKVMRDASGKSKGFGFVSFESHQAAQKAVEEMNGKDINGQPVFVGRAQKKGERQAELKEMFEQKKKE |
Parental | RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR |
RI...QGV.LY.KNLDD.IDDE.LRKEFS.FG.I...KVM.E.G.SKGFG..CFSS.EEA..A..EMNGR | |
Retrocopy | RIRGRQGVKLYIKNLDDSIDDEKLRKEFSSFGSINRVKVMQEEGQSKGFGLICFSSSEEALAAMAEMNGR |
Parental | IVATKPLYVALAQR |
I...K.L..ALAQ. | |
Retrocopy | ILGSKALNIALAQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015833 | 5 retrocopies | |
Homo sapiens | ENSG00000070756 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017786 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006222 | 4 retrocopies | |
Mus musculus | ENSMUSG00000022283 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004354 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018790 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008639 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011267 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016395 | 2 retrocopies |
retro_itri_139, retro_itri_48 ,
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