RetrogeneDB ID: | retro_itri_1405 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393477.1:415760..416086(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 69.91 % |
Parental protein coverage: | 77.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LSFLADNAAANMVNVPK-TRRTFCKKCGKHQPHK-VTQYKKGKDSLYAQGK-RRYDRKQSGYGGQTKPIF |
LSF.A.NA.ANMVN.PK.T..TFCKK.GKH..HK..TQ.KKGKD.LYAQGK.R..D.KQSGYGG.TKPIF | |
Retrocopy | LSFHAYNASANMVNFPK<THWTFCKKYGKHKSHK<MTQFKKGKDCLYAQGK>RTNDKKQSGYGGKTKPIF |
Parental | RKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKR |
RKK.KTT.KI.L..EC.EPNCRSKR.L.IK..K.FE..GD..R | |
Retrocopy | RKKSKTT-KILLMPECDEPNCRSKRRLGIKKFKYFEMEGDERR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |