RetrogeneDB ID: | retro_itri_903 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393341.1:1297488..1297780(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSSTOG00000027251 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 68.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK-AKTTKKIVLRL |
VNVPKTR.TFCKKCGKHQPHKVTQY.KGKDSLYAQGKR.YDRKQSGYGGQTKPIFRKK.AKTTKKIVLRL | |
Retrocopy | VNVPKTRLTFCKKCGKHQPHKVTQY*KGKDSLYAQGKRSYDRKQSGYGGQTKPIFRKK>AKTTKKIVLRL |
Parental | ECVEPNCRSKRMLAIKRCKHFELGGDKK |
ECVEPNCRS.RMLAIKRC.HFELGGD.K | |
Retrocopy | ECVEPNCRSERMLAIKRC*HFELGGDEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |