RetrogeneDB ID: | retro_itri_1419 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393481.1:3124071..3124598(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000027831 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.15 % |
Parental protein coverage: | 50.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AQMHLDALNLATEKITQTLLHINFLAPLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLII |
AQ.H...LN........TLLHINFLA.LF.VLLWVKPITKDYIMNPPLGKESVPLMT.ATFD.L.LWLII | |
Retrocopy | AQKHMQ-LNICFPS**RTLLHINFLALLFIVLLWVKPITKDYIMNPPLGKESVPLMTKATFDALLLWLII |
Parental | LLCALRLAMMRSHLQAYLNLAQKCVDQMKKEAGRISTVELQK-MVARVFYYLCVIALQYVAPLVMLLHTT |
LLC.LRLAMMRSHLQAYLNLAQKCVDQMKKEAG.IS.VE.QK.M.ARVFYYLCVIALQY.APLVMLLHT. | |
Retrocopy | LLCVLRLAMMRSHLQAYLNLAQKCVDQMKKEAGQISIVEPQK<MMARVFYYLCVIALQYMAPLVMLLHTA |
Parental | LLLKTLGNHSWGIYPESVSTLPVDNSLHSNSVYSELPS |
LLLK.L..HSWGIYPESVSTLPVDNSLHS.SVYSELP. | |
Retrocopy | LLLKILDDHSWGIYPESVSTLPVDNSLHSISVYSELPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010857 | 1 retrocopy | |
Homo sapiens | ENSG00000164180 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005684 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009319 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013645 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017064 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000032414 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011141 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027831 | 2 retrocopies |
retro_itri_1419 , retro_itri_1787,
|