RetrogeneDB ID: | retro_itri_1787 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393779.1:196571..197138(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000027831 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.12 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SYLWFFLNFSFCSKVLFSLTTHYFKVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSD |
S..W..L..SF..KVLFSLTTHYFKVEDGGERSVCVTFG...FVKAMAVLIVTENYLEFGLETGFTNFSD | |
Retrocopy | SLVWCLLVLSFAIKVLFSLTTHYFKVEDGGERSVCVTFGXXXFVKAMAVLIVTENYLEFGLETGFTNFSD |
Parental | SAMQFLEKQGLESQGPVSKLTFKFFLAIFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLA |
SAMQFLEKQGLESQGP.SKLTFKFFLAIFCSLIG.FLTFPGLRLAQMHLDALNLATEKITQTLLHINFLA | |
Retrocopy | SAMQFLEKQGLESQGPDSKLTFKFFLAIFCSLIGDFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLA |
Parental | PLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCAL |
PLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCAL | |
Retrocopy | PLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIILLCAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010857 | 1 retrocopy | |
Homo sapiens | ENSG00000164180 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005684 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009319 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013645 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017064 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000032414 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011141 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027831 | 2 retrocopies |
retro_itri_1419, retro_itri_1787 ,
|