RetrogeneDB ID: | retro_itri_688 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393311.1:9609500..9609838(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSAIQNLHS-FDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC |
MSAIQNLHS.FDPFADAS.GD.LL.AGTED.IHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF.KKFAC | |
Retrocopy | MSAIQNLHS<FDPFADASDGDELLAAGTED*IHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFRKKFAC |
Parental | NGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
.GTV.EHPEY..VIQLQGDQR.N.CQ.LVE.GLAKD.Q.K...F | |
Retrocopy | HGTVMEHPEYAGVIQLQGDQRRNLCQVLVEVGLAKDHQPKEDQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |