Parental gene:

EIF1, ENSSTOG00000002719

Aliases:None
Description:eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393300.1:16617789..16619830(+)


>ENSSTOG00000002719
ATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTGATGACCTGCTTCCTGCTGGCAC
TGAGGATTATATCCATATAAGAATTCAACAGAGAAACGGCAGGAAGACCCTTACTACTGTCCAAGGGATCGCTGATGATT
ACGATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGTACTGTAATTGAGCATCCAGAATATGGA
GAAGTAATTCAGCTACAGGGTGACCAGCGCAAGAACATATGCCAGTTCCTGGTAGAGATTGGACTGGCTAAGGACGATCA
GCTGAAGGTTCATGGGTTTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005620 ortholog_one2one 9 retrogenes
retro_amel_1335, retro_amel_335, retro_amel_567, retro_amel_575, retro_amel_587, retro_amel_666, retro_amel_782, retro_amel_798, retro_amel_823,
Bos taurus ENSBTAG00000002282 ortholog_one2one 1 retrogene
retro_btau_63,
Callithrix jacchus ENSCJAG00000012120 possible_ortholog 6 retrogenes
retro_cjac_1237, retro_cjac_2089, retro_cjac_346, retro_cjac_3815, retro_cjac_600, retro_cjac_84,
Dasypus novemcinctus ENSDNOG00000007856 ortholog_one2one 11 retrogenes
retro_dnov_1098, retro_dnov_1110, retro_dnov_1368, retro_dnov_148, retro_dnov_1516, retro_dnov_1668, retro_dnov_1807, retro_dnov_2062, retro_dnov_2209, retro_dnov_402, retro_dnov_421,
Dipodomys ordii ENSDORG00000013853 possible_ortholog 4 retrogenes
retro_dord_349, retro_dord_350, retro_dord_663, retro_dord_753,
Felis catus ENSFCAG00000024455 ortholog_one2one 2 retrogenes
retro_fcat_1555, retro_fcat_74,
Homo sapiens ENSG00000173812 ortholog_one2one 2 retrogenes
retro_hsap_1659, retro_hsap_271,
Macropus eugenii ENSMEUG00000015360 ortholog_one2one 6 retrogenes
retro_meug_1513, retro_meug_1635, retro_meug_2189, retro_meug_315, retro_meug_749, retro_meug_821,
Myotis lucifugus ENSMLUG00000005077 ortholog_one2many 3 retrogenes
retro_mluc_233, retro_mluc_305, retro_mluc_330,
Mustela putorius furo ENSMPUG00000010883 ortholog_one2one 6 retrogenes
retro_mputfur_1019, retro_mputfur_1072, retro_mputfur_1239, retro_mputfur_1299, retro_mputfur_41, retro_mputfur_752,
Nomascus leucogenys ENSNLEG00000011013 ortholog_one2one 3 retrogenes
retro_nleu_1482, retro_nleu_2005, retro_nleu_92,
Otolemur garnettii ENSOGAG00000031577 ortholog_one2one 6 retrogenes
retro_ogar_1349, retro_ogar_1701, retro_ogar_1940, retro_ogar_2645, retro_ogar_2899, retro_ogar_856,
Pongo abelii ENSPPYG00000029667 ortholog_one2one 1 retrogene
retro_pabe_127,
Pan troglodytes ENSPTRG00000009175 ortholog_one2one 3 retrogenes
retro_ptro_1261, retro_ptro_227, retro_ptro_2923,
Pteropus vampyrus ENSPVAG00000010629 ortholog_one2one 4 retrogenes
retro_pvam_1152, retro_pvam_471, retro_pvam_665, retro_pvam_923,
Rattus norvegicus ENSRNOG00000033765 possible_ortholog 15 retrogenes
retro_rnor_1088, retro_rnor_1347, retro_rnor_1518, retro_rnor_1744, retro_rnor_1971, retro_rnor_2067, retro_rnor_2171, retro_rnor_2203, retro_rnor_2532, retro_rnor_2548, retro_rnor_2579, retro_rnor_45, retro_rnor_532, retro_rnor_571, retro_rnor_65,
Sorex araneus ENSSARG00000006287 possible_ortholog 1 retrogene
retro_sara_36,
Sarcophilus harrisii ENSSHAG00000005729 possible_ortholog 1 retrogene
retro_shar_42,
Ictidomys tridecemlineatus ENSSTOG00000012168 within_species_paralog 1 retrogene
retro_itri_1597,
Tursiops truncatus ENSTTRG00000017135 ortholog_one2one 3 retrogenes
retro_ttru_1664, retro_ttru_224, retro_ttru_315,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_220 72.58 53.98
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2. retro_itri_285 92.11 100.00
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3. retro_itri_526 93.86 100.00
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4. retro_itri_606 85.09 100.00
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5. retro_itri_688 83.33 100.00
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6. retro_itri_702 74.55 97.35
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7. retro_itri_977 70.18 99.12
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8. retro_itri_1082 70.37 69.91
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9. retro_itri_1184 70.64 95.58
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10. retro_itri_1369 95.61 100.00
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11. retro_itri_1398 68.85 53.98
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12. retro_itri_1401 69.35 53.98
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13. retro_itri_1716 67.54 99.12
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14. retro_itri_1784 80.25 70.80
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15. retro_itri_1846 93.81 100.00
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Download FASTA sequences of all ENSSTOG00000002719 retrocopies