RetrogeneDB ID: | retro_itri_1640 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393600.1:570640..571031(-) | ||
Located in intron of: | ENSSTOG00000001085 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSSTOG00000001982 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 65.67 % |
Parental protein coverage: | 52.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
MESGKM.P.KN...DA..MAQILKDMGITE.EPRVINQMLEFAFR.VTTILD.AK..S..AKK..VD.DD | |
Retrocopy | MESGKMSP-KNMLKDAQMMAQILKDMGITEDEPRVINQMLEFAFR*VTTILDNAKLCSRYAKKSTVDVDD |
Parental | VRLAIQCRADQSFTSPPPRDFL-LDIARQKNQTPLPLIK-PYSGPRLPPDRYCLTAPNYRLKSL |
V.L.IQC..DQSF.SP.PRD...LDIA........PL......GP.L.PDR..L.APNYR.KSL | |
Retrocopy | VKLEIQCQDDQSFMSPLPRDXXXLDIA--RQRNQIPLPR>SNQGPKLSPDR*YLIAPNYRFKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |