RetrogeneDB ID: | retro_cpor_906 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_325:196138..196885(+) | ||
Located in intron of: | ENSCPOG00000026207 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSCPOG00000002098 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.12 % |
Parental protein coverage: | 96.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEPGKMAPSKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD |
ME.GKMA..K..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADD | |
Retrocopy | MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD |
Parental | VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQ |
VRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK..... | |
Retrocopy | VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASATA |
Parental | GRL-VPRLSVGAVSSRPTTPTIA--APQTVSVPNKVATPVSVTSQRFTVQIPSSQSTPVK-PVPATTAVQ |
GR..VPRLSVG.V.SRP.TPT.....PQ..SV..KV..PVS.T.QRFTVQ.P.SQ...VK...PAT.AV. | |
Retrocopy | GRITVPRLSVGSVTSRPSTPTLGTPTPQAMSVSAKVGAPVSLTGQRFTVQMPASQAPTVKASIPATSAVP |
Parental | NVLINPSMIGSKNILITTNMVSTQNTTSE-SNPLKRKHE |
NVLINPS.IGSKNILITTNMVS.QNT.SE.SN.LKRK.E | |
Retrocopy | NVLINPSLIGSKNILITTNMVSSQNTASESSNALKRKRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 31 .92 RPM | 2 .93 RPM |
SRP017611_kidney | 70 .45 RPM | 2 .30 RPM |
SRP017611_liver | 37 .30 RPM | 1 .22 RPM |
SRP040447_lung | 47 .29 RPM | 1 .87 RPM |
SRP040447_skeletal_muscle | 19 .57 RPM | 1 .63 RPM |