RetrogeneDB ID: | retro_fcat_1036 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:66554974..66555367(-) | ||
Located in intron of: | ENSFCAG00000012035 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9B | ||
Ensembl ID: | ENSFCAG00000025493 | ||
Aliases: | None | ||
Description: | TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306] |
Percent Identity: | 75.37 % |
Parental protein coverage: | 50.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MESSKMAPPKNAPRDALVMAQILK-DMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDAD |
MES.KMA.PK....DA..MAQILK.DMGITEY.PRVINQM.EFAF.YVTTILD.AKIY..HAKK..V.A. | |
Retrocopy | MESGKMASPKSTLKDAQMMAQILK<DMGITEYKPRVINQM-EFAF*YVTTILDEAKIY*RHAKKATVNAN |
Parental | DVRLAIQCRADQSFTSPPPRDF-LLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSL |
DV.LA.QC.AD.SFTSPPPRDF.LLD.ARQ.NQTPLP..KPY.GPRLPP.RY..TAPNYRL.SL | |
Retrocopy | DV*LATQCNADRSFTSPPPRDF>LLDVARQRNQTPLPVTKPYSGPRLPPERYWFTAPNYRLQSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .48 RPM |
SRP017611_liver | 0 .00 RPM | 5 .36 RPM |