RetrogeneDB ID: | retro_ocun_490 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:85543556..85544300(-) | ||
Located in intron of: | ENSOCUG00000020970 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000014717 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.24 % |
Parental protein coverage: | 89.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DNMESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDA |
D.MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDA | |
Retrocopy | DIMESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDA |
Parental | DDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GP |
DDVRLAIQCRADQSFTSPPPRDFLLDIARQ.NQTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK... | |
Retrocopy | DDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAST |
Parental | NQGRL-VPRLNVGAVNSRPTTPTVA--TPQTVSVPNKVATPVSMTSQRFTVQIPPSQSAPVK-PVPAATS |
..GR..VPRL.VG.V.SRP.TPT....TPQT.SV..KVATP.S.T.QRFTVQ.P.SQS..VK...PA... | |
Retrocopy | SAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVATPMSLTGQRFTVQMPASQSPAVKASIPATSA |
Parental | VPNVLINPSMIGPKNILITTNMVSSQNTANESNPLKRK |
V.NVLINPS.IG.KNILITTNMVSSQNTA.E.N.LKRK | |
Retrocopy | VQNVLINPSLIGSKNILITTNMVSSQNTASETNALKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 28 .42 RPM | 9 .55 RPM |
SRP017611_kidney | 15 .00 RPM | 11 .55 RPM |
SRP017611_liver | 3 .55 RPM | 2 .77 RPM |