RetrogeneDB ID: | retro_itri_1839 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394004.1:120016..120390(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026117 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.08 % |
Parental protein coverage: | 88.19 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MPKNKGKGGKNRR-RGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKR-LCHIRGKLRKK |
MPKNKG..G...R.RG.N.N.SE.R..V.K..GQE.AQ.I.M.GNG.LEAM.F.GVKR..CHIRGKLRKK | |
Retrocopy | MPKNKGE-GGENR>RGRNKNGSEERVGVQK-GGQECAQGIRMMGNGPLEAMNFNGVKR<VCHIRGKLRKK |
Parental | VWINTSDIILVGLRDYQDNKADVILKYNADEARSLK-AYGELPEHAKINETDTFGPGDDD |
VW.NT.DIILV.L.D.Q.NK.DVILKY.A.....L...Y..L.E..KINE.DT.GPGDD. | |
Retrocopy | VWRNTPDIILVVL*DNQNNKSDVILKYKAN*S*KLR<VY*QLLEQPKINEPDTYGPGDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005371 | 1 retrocopy | |
Equus caballus | ENSECAG00000006469 | 2 retrocopies | |
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026117 | 1 retrocopy |
retro_itri_1839 ,
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