RetrogeneDB ID: | retro_itri_453 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393292.1:11293093..11293537(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPRKB | ||
Ensembl ID: | ENSSTOG00000016406 | ||
Aliases: | None | ||
Description: | TP53RK binding protein [Source:HGNC Symbol;Acc:24259] |
Percent Identity: | 76.35 % |
Parental protein coverage: | 84.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DLRKKAMEGTIDGALINPSVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFG |
DLRKK.M..TIDGAL......VDPFQIL.AANK.V.LYKLGKMK.RTLSTEI.F..SP.NN.SEALKKF. | |
Retrocopy | DLRKKIMKDTIDGALLKLTMTVDPFQILMAANKVVNLYKLGKMKMRTLSTEIVFKHSPTNNTSEALKKFD |
Parental | ISADNTSILIVYVEEGEKQVNQKYLISQVEGDQISLKNLPEITNISEVKKIYKVSSQEEKIGTLLGGIIS |
ISAD..SILI.Y.EE.EKQ.N.KYLISQV.G.Q.SLKNLPE.TNISEVKKIYK.SSQEE.IGTLL.GII. | |
Retrocopy | ISADHNSILIFYIEEEEKQINKKYLISQV*GHQMSLKNLPETTNISEVKKIYKLSSQEEEIGTLLDGIIN |
Parental | RMSTKDVL |
.MSTKDVL | |
Retrocopy | TMSTKDVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012021 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004162 | 3 retrocopies | |
Homo sapiens | ENSG00000144034 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000030805 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016950 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000300 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016251 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000032893 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012292 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012419 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016406 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000014584 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007934 | 2 retrocopies |