RetrogeneDB ID: | retro_itri_918 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393344.1:4450264..4450659(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPRKB | ||
Ensembl ID: | ENSSTOG00000016406 | ||
Aliases: | None | ||
Description: | TP53RK binding protein [Source:HGNC Symbol;Acc:24259] |
Percent Identity: | 61.94 % |
Parental protein coverage: | 75.43 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | INPSVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNN-ISEALKKFGISADNTSILIVYVE |
....V.VDPFQILVAANKAVHL.KLGKMK.R.LSTEII.NLSP.NN.......K...S...T........ | |
Retrocopy | VKNAVTVDPFQILVAANKAVHL*KLGKMKMRALSTEIISNLSP-NN>VFQRF*KNLLSRQMTLPFSLFTL |
Parental | EGEKQVNQKYLISQVEGDQISLKNLPEITNISEVKKIYKVSSQEE-KIGTLLGGIISRMSTKDV |
..EK.....YL.SQVEG..ISLKNLPE..NIS.VKKIYK.SSQEE.KI.T.L.GI.SR.STKDV | |
Retrocopy | KREKNK*KIYLVSQVEGHLISLKNLPERMNISNVKKIYKQSSQEE>KIRT*LDGIASRVSTKDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012021 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004162 | 3 retrocopies | |
Homo sapiens | ENSG00000144034 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000030805 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016950 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000300 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016251 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000032893 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012292 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012419 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016406 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000014584 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007934 | 2 retrocopies |