RetrogeneDB ID: | retro_itri_936 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393346.1:8013337..8013734(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSSTOG00000014258 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540] |
Percent Identity: | 70.37 % |
Parental protein coverage: | 65.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SIMSYNGGAVMAMKGKNCVAI-AADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR |
SIMS.N.G.V.A..GKNCV...AADR.F.IQ.QMVTTDF..I..MGD.LYIGL..L.TD..TVAQ.LKF. | |
Retrocopy | SIMSHNTGVVIALNGKNCVSM<AADRHFRIQVQMVTTDFK*ISSMGDQLYIGLVKLTTDIYTVAQHLKFW |
Parental | L-NLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTD |
L..LYELK.G.QIKPYTL..M.AN..YEK.FGPYYT.PVIAGL..K.FK.FICSLDLIGCPMV.D | |
Retrocopy | L<DLYELKKGQQIKPYTLINMIANFFYEKQFGPYYTVPVIAGLYLKIFKSFICSLDLIGCPMVND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016587 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008246 | 1 retrocopy | |
Equus caballus | ENSECAG00000000987 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015275 | 1 retrocopy | |
Homo sapiens | ENSG00000108294 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007067 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002233 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004131 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000002997 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012363 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012614 | 2 retrocopies | |
Mus musculus | ENSMUSG00000069744 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000594 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002598 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008505 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002270 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012938 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014258 | 3 retrocopies |
retro_itri_527, retro_itri_935, retro_itri_936 ,
|