RetrogeneDB ID: | retro_rnor_2804 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:55825140..55825746(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psmb3 | ||
Ensembl ID: | ENSRNOG00000012938 | ||
Aliases: | None | ||
Description: | proteasome subunit beta type-3 [Source:RefSeq peptide;Acc:NP_058981] |
Percent Identity: | 91.58 % |
Parental protein coverage: | 98.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR |
MS.M.YNGGA..AMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTV.QRLKFR | |
Retrocopy | MSIMCYNGGAMTAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVVQRLKFR |
Parental | LNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG |
LNLYELK.GRQIKPYTL.SMVANLL.EK.FGPYYTEP.IAGLDPKTFKPFICSL.LIGC.MVTDDF.VSG | |
Retrocopy | LNLYELK*GRQIKPYTLLSMVANLL*EKQFGPYYTEPIIAGLDPKTFKPFICSLGLIGCSMVTDDFIVSG |
Parental | TCSEQMYGMCESLWEPNMEPEHLFETISTPMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKA |
TCSEQMYGMCESLWEPNM.PEHLFETIS..MLNAVDRDA.SGMGVIVHIIEKDKITTRTLKA | |
Retrocopy | TCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAMSGMGVIVHIIEKDKITTRTLKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .88 RPM | 28 .61 RPM |
SRP017611_kidney | 3 .49 RPM | 34 .61 RPM |
SRP017611_liver | 3 .09 RPM | 30 .19 RPM |