RetrogeneDB ID: | retro_cfam_135 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:45750753..45751368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003032 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSCAFG00000016587 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris proteasome (prosome, macropain) subunit, beta type, 3 (PSMB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001252157] |
Percent Identity: | 96.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR |
MSIMSYNGGAVMAMKGKNC.AIAADRRFGIQAQMVTTDFQ.IFPMGDRLYIGLAGLATDVQ.VAQ.LKFR | |
Retrocopy | MSIMSYNGGAVMAMKGKNCMAIAADRRFGIQAQMVTTDFQ-IFPMGDRLYIGLAGLATDVQAVAQCLKFR |
Parental | LNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG |
LNLYELKEG.QIKPYTLMSMVANLLYEKRFGPYYTEPVI.GLDPKTFKPFICSLDLIGCPMVTDDFVVSG | |
Retrocopy | LNLYELKEGQQIKPYTLMSMVANLLYEKRFGPYYTEPVITGLDPKTFKPFICSLDLIGCPMVTDDFVVSG |
Parental | TCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD |
TCSEQMYGMCESLWEPNMDPEHLFE.ISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKA.MD | |
Retrocopy | TCSEQMYGMCESLWEPNMDPEHLFENISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKAHMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 38 .85 RPM |
SRP017611_brain | 0 .00 RPM | 19 .29 RPM |
SRP017611_kidney | 0 .13 RPM | 64 .72 RPM |
SRP017611_liver | 0 .00 RPM | 18 .56 RPM |