RetrogeneDB ID: | retro_rnor_1016 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:83127816..83128186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psmb3 | ||
Ensembl ID: | ENSRNOG00000012938 | ||
Aliases: | None | ||
Description: | proteasome subunit beta type-3 [Source:RefSeq peptide;Acc:NP_058981] |
Percent Identity: | 87.9 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR- |
S.MSYNGGAVMAMKGKNCV.IAADR.FGIQAQMVTTDFQKIF.MGDRLYIGLA.LATD.QTVAQRLKFR. | |
Retrocopy | SIMSYNGGAVMAMKGKNCVVIAADRCFGIQAQMVTTDFQKIFSMGDRLYIGLASLATDIQTVAQRLKFR> |
Parental | LNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL |
LNLYELKEGRQIKPYTL.SMVANLLYEK.FGPYYTEPVIAGLDPKTF....C.. | |
Retrocopy | LNLYELKEGRQIKPYTLLSMVANLLYEKWFGPYYTEPVIAGLDPKTFALIGCPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .61 RPM |
SRP017611_liver | 0 .00 RPM | 30 .19 RPM |