RetrogeneDB ID: | retro_ggor_103 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:105514871..105515489(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027149 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSGGOG00000007067 | ||
Aliases: | None | ||
Description: | Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:G3QVX5] |
Percent Identity: | 88.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR |
MSIMSYNGGAVMAMKGKNCVAIAADR.FGIQAQMVTTDFQ.IFPMG..LYIGLAGLATD.QTVAQ.LKFR | |
Retrocopy | MSIMSYNGGAVMAMKGKNCVAIAADRHFGIQAQMVTTDFQEIFPMGGWLYIGLAGLATDIQTVAQCLKFR |
Parental | LNLYELKEGRQIKPHTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG |
LNLYELKEG.QIKP.T..SMVAN.LYEK.FGPYYTEPVIAGLD.KTFKPF.CSLDLIGCPMVTDDFVV.G | |
Retrocopy | LNLYELKEGQQIKPYTFTSMVANPLYEKHFGPYYTEPVIAGLDLKTFKPFSCSLDLIGCPMVTDDFVVNG |
Parental | TCAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD |
..AEQMYGMCESLWEPNMDPEHLFETISQAMLNAVD..A.SGMGVI.HI.EKDKITTRTLKA.MD | |
Retrocopy | SYAEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDWGAGSGMGVIIHITEKDKITTRTLKAQMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .36 RPM |
SRP007412_heart | 0 .00 RPM | 26 .70 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .29 RPM |
SRP007412_liver | 0 .00 RPM | 57 .85 RPM |
SRP007412_testis | 0 .83 RPM | 29 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2387 |
Pongo abelii | retro_pabe_2153 |
Callithrix jacchus | retro_cjac_2852 |