RetrogeneDB ID: | retro_eeur_10 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_206474:4549..5167(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000014051 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000015275 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSIMSYNGGAVMAMKGKDCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR |
MSIMSYN.G.VMAMK.KD.VAIAA.RRFGIQ.QMVT.DFQKIFPMG.RLYI.LA.LATDVQT.AQRLKFR | |
Retrocopy | MSIMSYNEGDVMAMKRKDYVAIAANRRFGIQTQMVTMDFQKIFPMGCRLYISLARLATDVQTIAQRLKFR |
Parental | LNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG |
LNL.ELKEGRQIK.YTLMSMVANLLYEKRFGPYYTEPVIAGL.PKTFKP.ICSLDLI.CPMVTDDFVVSG | |
Retrocopy | LNLCELKEGRQIKLYTLMSMVANLLYEKRFGPYYTEPVIAGLNPKTFKPLICSLDLISCPMVTDDFVVSG |
Parental | TCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD |
TCSEQMYGMCESLWEPNMDPEHLFETISQAM.NAVD...VSGMGV..H.I.KDKITTRTLK.RMD | |
Retrocopy | TCSEQMYGMCESLWEPNMDPEHLFETISQAMPNAVDCYTVSGMGVMTHVIKKDKITTRTLKPRMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 26 .75 RPM |
SRP017611_kidney | 0 .19 RPM | 60 .01 RPM |
SRP017611_liver | 0 .16 RPM | 76 .21 RPM |