RetrogeneDB ID: | retro_lafr_1023 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_6:18025785..18026015(-) | ||
Located in intron of: | ENSLAFG00000007066 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BET1 | ||
Ensembl ID: | ENSLAFG00000000587 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.64 % |
Parental protein coverage: | 64.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LTESLRSK-VTAIKSLSIEIGHEVKNQNKLLAEMDSEFDSTTGFLGKTMGKLKILSRGSQTKLLCYMMLF |
LTESL..K..TAIK.LSIEIG.EV.NQNKLLAEMD...DSTTGF.G.T.G.LKILSRGSQ.KLLCYMMLF | |
Retrocopy | LTESLSAK<ATAIKFLSIEIGREVRNQNKLLAEMDLQSDSTTGFWGETTGNLKILSRGSQIKLLCYMMLF |
Parental | SL-FVFFV |
SL.F..F. | |
Retrocopy | SLSFLSFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003424 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000001276 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013720 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001012 | 3 retrocopies | |
Homo sapiens | ENSG00000105829 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000002176 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000587 | 1 retrocopy |
retro_lafr_1023 ,
|
Macaca mulatta | ENSMMUG00000000007 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015441 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017029 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000004536 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000019408 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011008 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015325 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000765 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009729 | 2 retrocopies |