RetrogeneDB ID: | retro_lafr_816 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_4:60808176..60808714(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSLAFG00000017110 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.5 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | TEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINML-RI |
TEI...RMARKA.NFY..AEPKLAFVIRIRGI.GVSPK..KV.QLL.L.QI.NGTFV.L.KAS.NM..RI | |
Retrocopy | TEICKGRMARKADNFYIAAEPKLAFVIRIRGISGVSPKFQKVFQLLWLWQIVNGTFVNLYKASVNMI<RI |
Parental | VEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA-LTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEA |
V.PYI.W.YPNLKSVNELIYK.G.GK.N...IA.LTDNTLIA.SL.KYGIICMEDLIHEIYTV...FKEA | |
Retrocopy | VKPYIMWWYPNLKSVNELIYKHGNGKVNRQ-IA<LTDNTLIA*SLSKYGIICMEDLIHEIYTVAECFKEA |
Parental | NNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM |
.NFL.PFKLSS...GMKKKTTHFVEGGD.GNREDQIN..IR.. | |
Retrocopy | DNFL*PFKLSSS*DGMKKKTTHFVEGGDTGNREDQINKFIRKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000017654 | 15 retrocopies | |
Latimeria chalumnae | ENSLACG00000003571 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017110 | 10 retrocopies |
retro_lafr_140, retro_lafr_169, retro_lafr_334, retro_lafr_462, retro_lafr_47, retro_lafr_524, retro_lafr_694, retro_lafr_707, retro_lafr_816 , retro_lafr_909,
|
Macropus eugenii | ENSMEUG00000016319 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000007136 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008407 | 12 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009292 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000006182 | 3 retrocopies |