RetrogeneDB ID: | retro_dnov_1561 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_23499:49428..49951(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSDNOG00000017654 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 84. % |
Parental protein coverage: | 92.55 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | EKKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKA-KHYHKEYRQMYRTEIRMARM |
..K.KVPA.PETL..K.RNFAELKIK.LR.KFAQKML.KARRKL.YEKA.KH.H.EYRQMYRTEI..ARM | |
Retrocopy | KEKEKVPAMPETLQEKQRNFAELKIKHLRRKFAQKML*KARRKLTYEKA>KH*HMEYRQMYRTEIQIARM |
Parental | ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGY |
ARKAGNFYVP.EPKLAFVIRIRGINGVSPKV.KVLQLL.L.QIFNG.FVK.NKASINMLRIVE.YIA.GY | |
Retrocopy | ARKAGNFYVPVEPKLAFVIRIRGINGVSPKV*KVLQLLCLCQIFNGSFVKFNKASINMLRIVESYIALGY |
Parental | PNLKSVNELIYKRGYGKINKKRIALTDNSLIARSL |
PNLKSVNELI.KRGYGKINKK.IALT.NSLIA.SL | |
Retrocopy | PNLKSVNELICKRGYGKINKKWIALTGNSLIA*SL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .39 RPM | 220 .92 RPM |
SRP012922_cerebellum | 0 .27 RPM | 120 .56 RPM |
SRP012922_heart | 0 .00 RPM | 123 .90 RPM |
SRP012922_kidney | 0 .00 RPM | 273 .80 RPM |
SRP012922_liver | 0 .00 RPM | 112 .70 RPM |
SRP012922_lung | 0 .00 RPM | 262 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 188 .66 RPM |
SRP012922_spleen | 0 .00 RPM | 342 .58 RPM |