Parental gene:

ENSSSCG00000006182

Aliases:None
Description:Ribosomal protein L7 [Source:UniProtKB/TrEMBL;Acc:A8YQT8]
Organism:Pig (Sus scrofa)
Coordinates:GL894040.1:21698..25372(+)


>ENSSSCG00000006182
ATGGAGGGCGCAGATGTCAAAGAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAAGAATTT
CGCAGAGCTTAGGATTAAGCGCCTGAGAAAGAAGTTTGCCCAGAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTACG
AAAAAGCCAAGCACTATCACAAGGAATACAGGCAAATGTACAGAACTGAGATTCGAATGGCTAGGATGGCAAGAAAAGCT
GGCAACTTCTATGTACCTGCGGAACCCAAATTGGCATTTGTCATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGT
CAGAAAGGTGTTGCAGCTTCTTCGCCTCCGTCAGATCTTTAATGGCACCTTTGTGAAGCTCAACAAGGCTTCAATTAACA
TGCTGAGAATTGTGGAACCATATATCGCCTGGGGGTATCCAAACCTGAAGTCAGTAAATGAATTGATCTACAAGCGTGGT
TACGGCAAAATCAACAAGAAGCGAATTGCCCTGACAGATAACGCATTGATTGCTCGTTCTCTTGGTAAATACGGCATCAT
CTGCATGGAGGATCTGATTCATGAGATCTATACTGTTGGAAAACGTTTCAAAGAAGCAAACAACTTCCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGAGATGCTGGCAACAGGGAAGACCAGATCAACAGACTTATTAG

Library Parental gene expression (RPM)
SRP014902_placenta 366 .21 RPM
SRP014902_testis 1177 .26 RPM
SRP018288_heart 779 .39 RPM
SRP018288_kidney 476 .18 RPM
SRP018288_liver 369 .23 RPM
SRP018288_lung 408 .93 RPM
SRP018856_adipose 1726 .31 RPM
SRP035408_brain 332 .56 RPM
SRP035408_liver 242 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001821 possible_ortholog 5 retrogenes
retro_amel_1230, retro_amel_1632, retro_amel_760, retro_amel_933, retro_amel_937,
Canis familiaris ENSCAFG00000008021 possible_ortholog 28 retrogenes
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236, retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445, retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
Dasypus novemcinctus ENSDNOG00000017654 ortholog_one2one 15 retrogenes
retro_dnov_1561, retro_dnov_1692, retro_dnov_182, retro_dnov_1893, retro_dnov_209, retro_dnov_2158, retro_dnov_2568, retro_dnov_264, retro_dnov_2657, retro_dnov_279, retro_dnov_287, retro_dnov_365, retro_dnov_655, retro_dnov_77, retro_dnov_971,
Felis catus ENSFCAG00000028446 possible_ortholog 6 retrogenes
retro_fcat_1643, retro_fcat_230, retro_fcat_255, retro_fcat_338, retro_fcat_342, retro_fcat_945,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Loxodonta africana ENSLAFG00000017110 possible_ortholog 10 retrogenes
retro_lafr_140, retro_lafr_169, retro_lafr_334, retro_lafr_462, retro_lafr_47, retro_lafr_524, retro_lafr_694, retro_lafr_707, retro_lafr_816, retro_lafr_909,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Oryctolagus cuniculus ENSOCUG00000008407 possible_ortholog 12 retrogenes
retro_ocun_109, retro_ocun_1164, retro_ocun_1282, retro_ocun_1342, retro_ocun_1494, retro_ocun_1646, retro_ocun_1879, retro_ocun_456, retro_ocun_501, retro_ocun_718, retro_ocun_727, retro_ocun_785,
Pteropus vampyrus ENSPVAG00000009292 possible_ortholog 10 retrogenes
retro_pvam_105, retro_pvam_109, retro_pvam_1192, retro_pvam_1221, retro_pvam_151, retro_pvam_287, retro_pvam_308, retro_pvam_68, retro_pvam_69, retro_pvam_995,
Sus scrofa ENSSSCG00000026472 within_species_paralog 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_209 76.26 53.70
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2. retro_sscr_796 61.11 61.09
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3. retro_sscr_1138 61.11 61.09
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Download FASTA sequences of all ENSSSCG00000006182 retrocopies