RetrogeneDB ID: | retro_dnov_2158 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_517:242536..242844(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSDNOG00000017654 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 70.19 % |
Parental protein coverage: | 54.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPN |
.AG....PAEPKLAFVIR.RGINGV.PKV.KVLQLL...QIFNGT...LNKASINMLRIVEP.IAWG.PN | |
Retrocopy | QAGHICAPAEPKLAFVIRMRGINGVRPKV*KVLQLLCPCQIFNGTSIVLNKASINMLRIVEPDIAWGDPN |
Parental | LKSVNELIYKRGYGKINKK-RIALTDNSLIARSL |
.K.VNELI.K.G.GKI..K..IA.T..S..A.SL | |
Retrocopy | PKPVNELICKHGRGKIDRK<VIAMTAHSRTASSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 220 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 120 .56 RPM |
SRP012922_heart | 0 .00 RPM | 123 .90 RPM |
SRP012922_kidney | 0 .00 RPM | 273 .80 RPM |
SRP012922_liver | 0 .00 RPM | 112 .70 RPM |
SRP012922_lung | 0 .00 RPM | 262 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 188 .66 RPM |
SRP012922_spleen | 0 .00 RPM | 342 .58 RPM |