Parental gene:

RPL7, ENSDNOG00000017654

Aliases:None
Description:ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4101:3037..12465(-)


>ENSDNOG00000017654
TTCCAGGCAGGGGGAAATAAAAGACAGGATACCGTAGTTAGCGAGAAGAAGAAGAAGGTTCCTGCTGTACCAGAAACCCT
TAAGAAAAAGCGAAGGAATTTTGCTGAACTGAAGATCAAGCGTTTGAGAAAGAAGTTTGCCCAGAAGATGCTTCGAAAGG
CAAGGAGGAAGCTTATCTATGAAAAAGCTAAGCACTATCACAAAGAATATAGGCAGATGTACAGGACTGAGATTAGAATG
GCTAGAATGGCAAGAAAAGCTGGCAACTTTTATGTACCTGCGGAACCCAAATTGGCATTTGTCATCAGGATCAGAGGTAT
CAATGGTGTGAGCCCAAAGGTCCGGAAAGTGTTGCAACTTCTTCGCCTTCGCCAAATCTTCAACGGCACCTTTGTTAAAC
TCAACAAGGCCTCAATTAACATGCTGAGAATTGTGGAACCCTATATAGCATGGGGGTACCCAAACCTGAAATCAGTGAAT
GAACTGATCTATAAACGTGGTTATGGCAAGATCAACAAGAAACGGATTGCCTTGACAGATAACTCATTGATTGCACGATC
TCTT

Library Parental gene expression (RPM)
SRP012922_ascending_colon 220 .92 RPM
SRP012922_cerebellum 120 .56 RPM
SRP012922_heart 123 .90 RPM
SRP012922_kidney 273 .80 RPM
SRP012922_liver 112 .70 RPM
SRP012922_lung 262 .23 RPM
SRP012922_quadricep_muscle 188 .66 RPM
SRP012922_spleen 342 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001821 possible_ortholog 5 retrogenes
retro_amel_1230, retro_amel_1632, retro_amel_760, retro_amel_933, retro_amel_937,
Canis familiaris ENSCAFG00000008021 possible_ortholog 28 retrogenes
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236, retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445, retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
Dasypus novemcinctus ENSDNOG00000013485 within_species_paralog 1 retrogene
retro_dnov_689,
Felis catus ENSFCAG00000028446 possible_ortholog 6 retrogenes
retro_fcat_1643, retro_fcat_230, retro_fcat_255, retro_fcat_338, retro_fcat_342, retro_fcat_945,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2one 1 retrogene
retro_lcha_63,
Loxodonta africana ENSLAFG00000017110 possible_ortholog 10 retrogenes
retro_lafr_140, retro_lafr_169, retro_lafr_334, retro_lafr_462, retro_lafr_47, retro_lafr_524, retro_lafr_694, retro_lafr_707, retro_lafr_816, retro_lafr_909,
Macropus eugenii ENSMEUG00000016319 ortholog_one2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_one2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Oryctolagus cuniculus ENSOCUG00000008407 possible_ortholog 12 retrogenes
retro_ocun_109, retro_ocun_1164, retro_ocun_1282, retro_ocun_1342, retro_ocun_1494, retro_ocun_1646, retro_ocun_1879, retro_ocun_456, retro_ocun_501, retro_ocun_718, retro_ocun_727, retro_ocun_785,
Sus scrofa ENSSSCG00000006182 ortholog_one2one 3 retrogenes
retro_sscr_1138, retro_sscr_209, retro_sscr_796,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_77 66.45 79.79
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2. retro_dnov_182 69.47 68.62
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3. retro_dnov_209 77.71 92.55
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4. retro_dnov_264 79.77 90.96
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5. retro_dnov_279 69.52 55.32
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6. retro_dnov_287 70.49 95.21
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7. retro_dnov_365 91.10 77.66
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8. retro_dnov_655 67.57 58.51
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9. retro_dnov_971 65.77 78.19
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10. retro_dnov_1561 84.00 92.55
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11. retro_dnov_1692 97.74 93.62
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12. retro_dnov_1893 69.89 92.55
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13. retro_dnov_2158 70.19 54.79
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14. retro_dnov_2568 81.87 89.89
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15. retro_dnov_2657 84.25 67.55
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Download FASTA sequences of all ENSDNOG00000017654 retrocopies