Parental gene:

ENSOCUG00000008407

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:89056531..89058890(-)


>ENSOCUG00000008407
CTGTTTGCTAATAACATCAGAGAGAAGAAGAAGGTTCCTGCTGTGCCAGAAACCCTGAAGAAAAAGCGGAGGAATTTCGC
AGAGCTGAAGATCAAGCGCCTGAGGAAGAAGTTTGCCCAAAAGATGCTTCGAAAAGCAAGGAGGAAGCTTATCTATGAGA
AAGCGAAGCACTATCACAAGGAATACAGGCAGATGTACAGAACTGAAATTCGGATGGCGAGGATGGCAAGAAAAGCTGGA
AACTTCTACGTACCTGCAGAACCCAAGTTGGCATTTGTCATCAGGATCAGAGGTATCAATGGTGTGAGCCCCAAAGTCCG
AAAAGTGCTGCAGCTTCTTCGCCTTCGCCAGATCTTCAATGGCACCTTTGTTAAGCTCAACAAGGCCTCCATTAACATGC
TGAGGATTGTGGAGCCATATATTGCATGGGGGTACCCAAATTTGAAGTCAGTAAATGAACTAATTTACAAACGTGGCTAT
GGCAAAATCAATAAGAAGCGAATTGCTTTGACAGATAACACTCTGATTGCCCGCTCTCTTGGTAAATACAATATCATCTG
CATGGAGGATCTGATTCATGAGATCTATACTGTGGGGAAACACTTCAAGGAAGCAAATAACTTCCTGTGGCCCTTCAAGT
TATCTTCTCCCCGAGGTGGGATGAAGAAAAAGACCACCCATTTTGTAGAGGGTGGGGATGCTGGCAACAGGGAAGACCAA
ATCAACAGACTTATTAGAAGGATGAACTAA

Library Parental gene expression (RPM)
SRP017611_liver 123 .63 RPM
SRP017611_kidney 399 .55 RPM
SRP017611_brain 179 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000017654 possible_ortholog 15 retrogenes
retro_dnov_1561, retro_dnov_1692, retro_dnov_182, retro_dnov_1893, retro_dnov_209, retro_dnov_2158, retro_dnov_2568, retro_dnov_264, retro_dnov_2657, retro_dnov_279, retro_dnov_287, retro_dnov_365, retro_dnov_655, retro_dnov_77, retro_dnov_971,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Loxodonta africana ENSLAFG00000017110 ortholog_many2many 10 retrogenes
retro_lafr_140, retro_lafr_169, retro_lafr_334, retro_lafr_462, retro_lafr_47, retro_lafr_524, retro_lafr_694, retro_lafr_707, retro_lafr_816, retro_lafr_909,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Oryctolagus cuniculus ENSOCUG00000003844 within_species_paralog 6 retrogenes
retro_ocun_1393, retro_ocun_1604, retro_ocun_1818, retro_ocun_278, retro_ocun_509, retro_ocun_598,
Pteropus vampyrus ENSPVAG00000009292 ortholog_one2many 10 retrogenes
retro_pvam_105, retro_pvam_109, retro_pvam_1192, retro_pvam_1221, retro_pvam_151, retro_pvam_287, retro_pvam_308, retro_pvam_68, retro_pvam_69, retro_pvam_995,
Sus scrofa ENSSSCG00000006182 possible_ortholog 3 retrogenes
retro_sscr_1138, retro_sscr_209, retro_sscr_796,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_109 98.35 97.19
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2. retro_ocun_456 64.81 91.97
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3. retro_ocun_501 67.11 60.64
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4. retro_ocun_718 58.57 55.02
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5. retro_ocun_727 75.11 91.97
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6. retro_ocun_785 68.52 85.94
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7. retro_ocun_1164 59.83 90.76
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8. retro_ocun_1282 71.53 54.22
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9. retro_ocun_1342 62.59 54.62
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10. retro_ocun_1494 57.86 63.45
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11. retro_ocun_1646 83.50 81.93
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12. retro_ocun_1879 68.42 97.59
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Download FASTA sequences of all ENSOCUG00000008407 retrocopies