RetrogeneDB ID:

retro_meug_2154

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold95606:2828..3044(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VAMP4
Ensembl ID:ENSMEUG00000011226
Aliases:None
Description:vesicle-associated membrane protein 4 [Source:HGNC Symbol;Acc:12645]


Retrocopy-Parental alignment summary:






>retro_meug_2154
GATGAAGTAATTGATGCTATACAAGAGAATATTACAGAAGTAAATGAAAGAAGCGAGAGACTGGGCAAGCTACAAGATAA
ATCAGAAAGTTCATCAGAAAATGCAACAGCTCTTAGCAACAGATCTAAACATCTTTAAAGACAAATGTGGTGGCATGGAT
GCAAAATGAAAGCCATCATGGTTCTTGTATCTGAAAGCCTTTTGTTGGTAATTATC

ORF - retro_meug_2154 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75. %
Parental protein coverage: 51.06 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKMKAIVALVALILLLV
DEVID..QENIT.V.ER.ERL..LQDKSES.S.NATA.SNRSK.L.RQMWW.GCKMKAI..LV...LLLV
RetrocopyDEVIDAIQENITEVNERSERLGKLQDKSESSSENATALSNRSKHL*RQMWWHGCKMKAIMVLVSESLLLV
ParentalII
II
RetrocopyII

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2154 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2154 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000169561 retrocopy
Choloepus hoffmanni ENSCHOG000000001244 retrocopies
Felis catus ENSFCAG000000133711 retrocopy
Macropus eugenii ENSMEUG00000011226 13 retrocopies
Monodelphis domestica ENSMODG000000038111 retrocopy
Mustela putorius furoENSMPUG000000156091 retrocopy
Oryctolagus cuniculus ENSOCUG000000159671 retrocopy
Otolemur garnettii ENSOGAG000000267451 retrocopy
Pteropus vampyrus ENSPVAG000000143421 retrocopy
Sorex araneus ENSSARG000000017092 retrocopies
Sarcophilus harrisii ENSSHAG000000171792 retrocopies
Tupaia belangeri ENSTBEG000000108292 retrocopies
Vicugna pacos ENSVPAG000000074241 retrocopy



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