Parental gene:

VAMP4, ENSSHAG00000017179

Aliases:None
Description:vesicle-associated membrane protein 4 [Source:HGNC Symbol;Acc:12645]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856751.1:2549066..2578888(-)


>ENSSHAG00000017179
ATGCCTCCTAAATTCAAGCGCCACCTAAATGATGATGATGTCACTGGTTCCGTGAAAAGTGAAAGAAGAAATCTTCTAGA
AGAAGATTCAGATGAAGAAGAGGATTTTTTCTTAAGAGGCCCATCTGGACCAAAATTTGGACCACGGAATGACAAAATTA
GACATGTACAGAATCAGGTGGATGAAGTAATTGATGTCATGCAAGAAAATATTACAAAAGTAATTGAAAGAGGAGAAAGA
CTGGATGAACTACAAGACAAATCAGAAAGCTTATCAGATAATGCAACAGCTTTTAGCAACAGATCAAAACAGCTTCGAAG
ACAAATGTGGTGGCGTGGATGCAAAATGAAGGCCATCATGGCTCTAGTTGCTGTTATCCTTTTGCTGGTGATTATCATTC
CTATTGTCCTGAAATATCGGACTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016956 ortholog_one2one 1 retrogene
retro_amel_1457,
Choloepus hoffmanni ENSCHOG00000000124 ortholog_one2many 4 retrogenes
retro_chof_2225, retro_chof_2402, retro_chof_513, retro_chof_58,
Felis catus ENSFCAG00000013371 ortholog_one2one 1 retrogene
retro_fcat_1167,
Macropus eugenii ENSMEUG00000011226 ortholog_one2one 13 retrogenes
retro_meug_1053, retro_meug_115, retro_meug_1257, retro_meug_1406, retro_meug_1489, retro_meug_1587, retro_meug_163, retro_meug_2075, retro_meug_2154, retro_meug_319, retro_meug_386, retro_meug_569, retro_meug_75,
Monodelphis domestica ENSMODG00000003811 ortholog_one2many 1 retrogene
retro_mdom_268,
Mustela putorius furo ENSMPUG00000015609 ortholog_one2one 1 retrogene
retro_mputfur_315,
Oryctolagus cuniculus ENSOCUG00000015967 ortholog_one2one 1 retrogene
retro_ocun_844,
Otolemur garnettii ENSOGAG00000026745 ortholog_one2many 1 retrogene
retro_ogar_3369,
Pteropus vampyrus ENSPVAG00000014342 ortholog_one2one 1 retrogene
retro_pvam_97,
Sorex araneus ENSSARG00000001709 ortholog_one2one 2 retrogenes
retro_sara_234, retro_sara_79,
Tupaia belangeri ENSTBEG00000010829 ortholog_one2one 2 retrogenes
retro_tbel_2607, retro_tbel_4488,
Vicugna pacos ENSVPAG00000007424 ortholog_one2one 1 retrogene
retro_vpac_570,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_584 50.63 53.90
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2. retro_shar_747 72.15 55.32
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Download FASTA sequences of all ENSSHAG00000017179 retrocopies