RetrogeneDB ID: retro_ogar_3369

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873805.1:766596..766912(-)
• Located in intron of: ENSOGAG00000000568

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000026745
• Aliases: None
• Description: None

Sequence

>retro_ogar_3369
GTGAAAGATGAAAGCAAAAACTCTTTGAAAGATGATTCAGGCGGAGAGGAAGACTCCTTTCTTGGGGACCCATCTGAGCC
AATATTCAGACCTAGAAATGATAAAAAGAGCATAGAAGACAAGTGGATGAGGTAATGGTGACAGGCAAGAAAATCCCCTG
AAGATTATTAAAAGAGAAGAACAGCTAGATGAACCACAGGACAAATCAGAAAGCTCATTGCACAGTGGAACTGCTTTCCA
CAATGTATCCAAACACCAAAGGCAAAGATGGCAATGAGGATGCAAAATAAAGGCCATAATAATTTTGAGTCCTGGG

Alignment

ORF - retro_ogar_3369 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.82 %
• Parental protein coverage: 76.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VKSERVTFKKKDSKYVDYVFLRGPSGPRFGPRNDKIKHVQN-QVDEVIDV-MQENITKVIERGERLDELQ
          VK.E.....K.DS......FL..PS.P.F.PRNDK.K.....QVDEV.....QEN..K.I.R.E.LDE.Q
Retrocopy VKDESKNSLKDDSGGEEDSFLGDPSEPIFRPRNDK-KSIED<QVDEVMVT<RQENPLKIIKREEQLDEPQ

Parental  DKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAG
          DKSES.....TAF.N.SK...RQ.W..GCKIKAI..L..G
Retrocopy DKSESSLHSGTAFHNVSKH-QRQRWQ*GCKIKAIIILSPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3369 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 14 parental genes, and 32 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016956	1 retrocopy	retro_amel_1457,
Choloepus hoffmanni	ENSCHOG00000000124	4 retrocopies	retro_chof_2225, retro_chof_2402, retro_chof_513, retro_chof_58,
Felis catus	ENSFCAG00000013371	1 retrocopy	retro_fcat_1167,
Macropus eugenii	ENSMEUG00000011226	13 retrocopies	retro_meug_1053, retro_meug_115, retro_meug_1257, retro_meug_1406, retro_meug_1489, retro_meug_1587, retro_meug_163, retro_meug_2075, retro_meug_2154, retro_meug_319, retro_meug_386, retro_meug_569, retro_meug_75,
Monodelphis domestica	ENSMODG00000003811	1 retrocopy	retro_mdom_268,
Mustela putorius furo	ENSMPUG00000015609	1 retrocopy	retro_mputfur_315,
Oryctolagus cuniculus	ENSOCUG00000015967	1 retrocopy	retro_ocun_844,
Otolemur garnettii	ENSOGAG00000009797	1 retrocopy	retro_ogar_2300,
Otolemur garnettii	ENSOGAG00000026745	1 retrocopy	retro_ogar_3369 ,
Pteropus vampyrus	ENSPVAG00000014342	1 retrocopy	retro_pvam_97,
Sorex araneus	ENSSARG00000001709	2 retrocopies	retro_sara_234, retro_sara_79,
Sarcophilus harrisii	ENSSHAG00000017179	2 retrocopies	retro_shar_584, retro_shar_747,
Tupaia belangeri	ENSTBEG00000010829	2 retrocopies	retro_tbel_2607, retro_tbel_4488,
Vicugna pacos	ENSVPAG00000007424	1 retrocopy	retro_vpac_570,