RetrogeneDB ID: retro_meug_845

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold20679:3087..3669(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PERP
• Ensembl ID: ENSMEUG00000004872
• Aliases: None
• Description: PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:17637]

Sequence

>retro_meug_845
ATGCTGTACTGTGGCCTGGACCGTTAGTAATGCTGGTGGATCCTGCCCCTGCTTCCATTAACAACCATAGTCTTTGACAT
TATATCTCTGGCTGGTCAAGGCTGGTTGAAATCAGAGAACAAATCTCAGACATCCTTCCTGAGGTAGAAATACCTTAATG
AGGTTTGCCCTAGTTGTTCTGATTCCTTTGAAGAAAGCTGTGAGACCCTTATGAGCTGTGTCTGGGGAAGAGCAGCAGCT
GCCATGCTAATGTGTCCCTGCATCATTCTGGTTATATGCTTCATCCTCTCCTTCTTAGCTCTTTGTGAACCACAAATGCT
CGTTTTCCTGTGAGTGATTGCGAGACTGTTGGCCCTTGCTAATATGTTTTAGATCACCTCTCTGGTTATTTATCCAGTGA
TGTACACTCCCCAGTTCCTTCAAGGTGATCGGGTTATCAGGTGTTATTACAGCTTGGCCTGTGGCTTTGGCTGGGAAGCT
ACAATTATCCTCATGGGCTGAACTTCCTCCTGCTGCTGCCTCCCCAACGATGAAGATGATCTGCCGGGCAATGTTAAATC
TAGGTATTTGTAATCTTCATCC

Alignment

ORF - retro_meug_845 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.62 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLRCGLDCERCRWILPLLLLSAIVFDIIALTGRGWLESENKSQTSSLWWKCPNEVGPSGTGSFDEGCETL
          ML.CGLD...C.WILPLL.L..IVFDII.L.G.GWL.SENKSQTS.L..K..NEV.PS...SF.E.CETL
Retrocopy MLYCGLDR**CWWILPLLPLTTIVFDIISLAGQGWLKSENKSQTSFLR*KYLNEVCPSCSDSFEESCETL

Parental  MHYAWGRAAAAMLMCGCIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVMYTRQFL
          M...WGRAAAAMLMC.CIILVICFILSF.ALC.PQMLVFL.VI..LLALA..F.I.SLVIYPVMYT.QFL
Retrocopy MSCVWGRAAAAMLMCPCIILVICFILSFLALCEPQMLVFL*VIARLLALANMF*ITSLVIYPVMYTPQFL

Parental  QGDIVTRYYYNWAYGFGWAATIILIGCSFFFCCLPNYEDDLLGNAKPRYFYTSS
          QGD.V.R.YY..A.GFGW.ATIIL.G.....CCLPN.EDDL.GN.K.RY...SS
Retrocopy QGDRVIRCYYSLACGFGWEATIILMG*TSSCCCLPNDEDDLPGNVKSRYL*SSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_845 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_845 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020097	1 retrocopy	retro_btau_165,
Callithrix jacchus	ENSCJAG00000019024	1 retrocopy	retro_cjac_3992,
Homo sapiens	ENSG00000112378	2 retrocopies	retro_hsap_1523, retro_hsap_2901,
Gorilla gorilla	ENSGGOG00000028340	1 retrocopy	retro_ggor_1165,
Macropus eugenii	ENSMEUG00000004872	1 retrocopy	retro_meug_845 ,
Microcebus murinus	ENSMICG00000013979	1 retrocopy	retro_mmur_353,
Myotis lucifugus	ENSMLUG00000001473	1 retrocopy	retro_mluc_2287,
Macaca mulatta	ENSMMUG00000000997	1 retrocopy	retro_mmul_2156,
Nomascus leucogenys	ENSNLEG00000014930	2 retrocopies	retro_nleu_1934, retro_nleu_631,
Oryctolagus cuniculus	ENSOCUG00000004238	1 retrocopy	retro_ocun_170,
Otolemur garnettii	ENSOGAG00000011669	1 retrocopy	retro_ogar_631,
Pongo abelii	ENSPPYG00000017043	3 retrocopies	retro_pabe_1267, retro_pabe_2400, retro_pabe_2416,