RetrogeneDB ID: retro_mmur_353

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2558:128654..129233(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PERP
• Ensembl ID: ENSMICG00000013979
• Aliases: None
• Description: PERP, TP53 apoptosis effector [Source:HGNC Symbol;Acc:17637]

Sequence

>retro_mmur_353
ATGCTGCGCTGCGGCCTGGTCTGCGAGCGCTGCCGGTGGATCCTGCCGCTGCTCCTGCTCAGCGCCATCGCCTTCGACAT
CGTCGCGCTGTCTGGCCGCGGCTGGCTGCAGTCGAGCACCCACATCCAGACGTCCTCGCTGTGGTGGAGATGCCCCGGAG
AGCGCGGCGGCAGCGGGTCCCCAGAGCAAGGCTGCGAGAGCCTCATGGTCTACGCGTGGGGAAGAGCAGCCGCCGCCACG
CTCTTCTGTGGCTTCATCATCCTGGTGATCTGCTTCATCCTCTCCTTCTTTGCCCTCTGCGGACCTCAGATGCTTGTCTT
CCTAAGAGTGATCGGAGGCCTCCTCGCCCTGGCGGCTGTGTTCCAGATCATCTCCCTCGTCATTTACCCCGTGAAGTACA
CCCAGACCTTCAACCTTCATGCCAATCCTGCTGTCACTTACATCTATAACTGGGCCTACGGCTTCGGGTGGGCGGCCACA
GTTATCCTGATCGGTTGTGCCTTCTTCTTTTGCTGCCTCCCCAACTACGAAGACGACCTCCTGGGCAACGCCAAGCCCAG
GTACTTCTACACATCCGCC

Alignment

ORF - retro_mmur_353 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.38 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLRCGLACERCRWILPLLLLSAVVFDIIALAGPRWLQSDDHHQTSSL--KCTGE-GGSGSGD--CQSLD-
          MLRCGL.CERCRWILPLLLLSA..FDI.AL.G..WLQS..H.QTSSL...C.GE.GGSGS....C.SL..
Retrocopy MLRCGLVCERCRWILPLLLLSAIAFDIVALSGRGWLQSSTHIQTSSLWWRCPGERGGSGSPEQGCESLMV

Parental  FAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIIALVIYPVKYTQTFKLH
          .AWGRAAAA.LFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQII.LVIYPVKYTQTF.LH
Retrocopy YAWGRAAAATLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLH

Parental  EEPSVTFIYNWAYGFGWAATIILIGCSFFFCCLPNYEDDLLGNAKPRYLYASA
          ..P.VT.IYNWAYGFGWAAT.ILIGC.FFFCCLPNYEDDLLGNAKPRY.Y.SA
Retrocopy ANPAVTYIYNWAYGFGWAATVILIGCAFFFCCLPNYEDDLLGNAKPRYFYTSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_353 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_353 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020097	1 retrocopy	retro_btau_165,
Callithrix jacchus	ENSCJAG00000019024	1 retrocopy	retro_cjac_3992,
Homo sapiens	ENSG00000112378	2 retrocopies	retro_hsap_1523, retro_hsap_2901,
Gorilla gorilla	ENSGGOG00000028340	1 retrocopy	retro_ggor_1165,
Macropus eugenii	ENSMEUG00000004872	1 retrocopy	retro_meug_845,
Microcebus murinus	ENSMICG00000013979	1 retrocopy	retro_mmur_353 ,
Myotis lucifugus	ENSMLUG00000001473	1 retrocopy	retro_mluc_2287,
Macaca mulatta	ENSMMUG00000000997	1 retrocopy	retro_mmul_2156,
Nomascus leucogenys	ENSNLEG00000014930	2 retrocopies	retro_nleu_1934, retro_nleu_631,
Oryctolagus cuniculus	ENSOCUG00000004238	1 retrocopy	retro_ocun_170,
Otolemur garnettii	ENSOGAG00000011669	1 retrocopy	retro_ogar_631,
Pongo abelii	ENSPPYG00000017043	3 retrocopies	retro_pabe_1267, retro_pabe_2400, retro_pabe_2416,