RetrogeneDB ID: | retro_mluc_1154 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429799:9264274..9264571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDCD2 | ||
Ensembl ID: | ENSMLUG00000001670 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.74 % |
Parental protein coverage: | 63.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PVEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIRCDLQSRHVALAVGGREILKGKLFDSTIAD |
P.E..SGVV.C.T...Q..Q.LEEVFIEVQVPPGT...DIRCDLQS.HV..AV.G.EI.KGKL.DSTIAD | |
Retrocopy | PFEGHSGVVLCRTLGSQ*CQILEEVFIEVQVPPGTYTHDIRCDLQSWHVVPAVSGHEIFKGKLLDSTIAD |
Parental | EGTWTLEDRKMVRIVLTKTKRDAANCWTS |
EGTWTLEDR.MV.I..TKTKRDAAN.WTS | |
Retrocopy | EGTWTLEDRTMVCIIFTKTKRDAANYWTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005270 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014772 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015367 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014291 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004802 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001670 | 1 retrocopy |
retro_mluc_1154 ,
|
Monodelphis domestica | ENSMODG00000007641 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000021414 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005783 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024929 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007551 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028665 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000307 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008090 | 1 retrocopy |