RetrogeneDB ID: | retro_ocun_819 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:10991531..10991884(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDCD2 | ||
Ensembl ID: | ENSOCUG00000005783 | ||
Aliases: | None | ||
Description: | NudC domain containing 2 [Source:HGNC Symbol;Acc:30535] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 75.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AQDIQCGLQSRHV-ALAVGGREILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEY |
AQDI..G..S.H..ALA.GGREIL.GKL.DSTIADEGTW.LE..KMV..VLTKTKRD.ANCW.SLLESEY | |
Retrocopy | AQDIHGGP*SWHE<ALAEGGREILMGKLCDSTIADEGTWNLEA*KMVPSVLTKTKRDVANCWMSLLESEY |
Parental | AADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGNYTKGGPDFSTLEK |
AADPWVQDQMQR.LTLERFQKENPG.DFSG.E.SGNYTKGGPDFSTLEK | |
Retrocopy | AADPWVQDQMQRTLTLERFQKENPGLDFSGTETSGNYTKGGPDFSTLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .57 RPM |
SRP017611_kidney | 0 .10 RPM | 8 .62 RPM |
SRP017611_liver | 0 .00 RPM | 4 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005270 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014772 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015367 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014291 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004802 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001670 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007641 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000021414 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005783 | 1 retrocopy |
retro_ocun_819 ,
|
Otolemur garnettii | ENSOGAG00000024929 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007551 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028665 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000307 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008090 | 1 retrocopy |