RetrogeneDB ID: | retro_tsyr_1638 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_52488:6977..7448(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDCD2 | ||
Ensembl ID: | ENSTSYG00000008090 | ||
Aliases: | None | ||
Description: | NudC domain containing 2 [Source:HGNC Symbol;Acc:30535] |
Percent Identity: | 94.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDST |
MSAPFEE.SGVVPCG.PWGQWYQTLEEVFIEVQVPPGT.AQDIQCGLQSRHVALAVGGREILKGKLFDST | |
Retrocopy | MSAPFEECSGVVPCGNPWGQWYQTLEEVFIEVQVPPGTHAQDIQCGLQSRHVALAVGGREILKGKLFDST |
Parental | IADEGTWTLEDRKMVRIVLTKTKRDAANCWPSLLESEYAADPWVQDQMQRKLTLERFQKENSGFDFSGAE |
IADEG.WTLEDRKMVRIVLTKTKRDAANCWPSLLESEYAADP.VQDQMQRKLTLERFQKEN.GFDFSG.E | |
Retrocopy | IADEGMWTLEDRKMVRIVLTKTKRDAANCWPSLLESEYAADP*VQDQMQRKLTLERFQKENPGFDFSGTE |
Parental | ISGNYTKGRPDFSNLEK |
ISGNYTKG.PDF.NLEK | |
Retrocopy | ISGNYTKGGPDF*NLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005270 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014772 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015367 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014291 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004802 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001670 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007641 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000021414 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005783 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024929 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007551 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028665 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000307 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008090 | 1 retrocopy |
retro_tsyr_1638 ,
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