RetrogeneDB ID: | retro_mluc_1270 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429812:1610212..1610589(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000024653 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM5 | ||
Ensembl ID: | ENSMLUG00000013646 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.19 % |
Parental protein coverage: | 53.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LPGVSTVSTDLLREGAPIEPDPPVSHWKP-EAVQYYEDGARIEAAFRNYIHRADVKQQEDSYEIFICHAN |
LPGVS.VSTDLLR.GAPIEPDPP.SHWKP.EAVQYY.DGARI.AAFRNYIHRAD.KQQ.DSYEIF.CHAN | |
Retrocopy | LPGVSMVSTDLLRKGAPIEPDPPESHWKP<EAVQYYADGARIQAAFRNYIHRADAKQQQDSYEIFLCHAN |
Parental | VIRYIVCRALQFPPEGWLRLSLNNGSITHLVVRPDGCVALRALGDTGFMPPDKISRS |
V.RYIVCRALQFPPEGWLRLSL.NGSITHLVVRP.GCVAL.ALGDTGFM.PD.ISRS | |
Retrocopy | VTRYIVCRALQFPPEGWLRLSLHNGSITHLVVRPGGCVALTALGDTGFMSPDRISRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013437 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011867 | 2 retrocopies | |
Felis catus | ENSFCAG00000002503 | 2 retrocopies | |
Homo sapiens | ENSG00000247077 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013646 | 1 retrocopy |
retro_mluc_1270 ,
|
Macaca mulatta | ENSMMUG00000015466 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005657 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037443 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026764 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010653 | 1 retrocopy |