RetrogeneDB ID: | retro_mmul_2101 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:106193371..106193880(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM5 | ||
Ensembl ID: | ENSMMUG00000015466 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.16 % |
Parental protein coverage: | 97.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RREPLSLINLRKRNVESGEEELASKLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGL |
RREPLSL.NLRKRNVESGEE.LAS.LDH..AK.T..I.LI...QYHVDGSLEKD..L..LGRE..ELTGL | |
Retrocopy | RREPLSLNNLRKRNVESGEE-LASRLDHCRAKTTAYILLITRCQYHVDGSLEKDCGLNLLGREPVELTGL |
Parental | RLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVSTDLLREGAPIEPDPPVSHWKPEAVQYYEDGAR |
..ASLGL.FNKIVHSSMT..IETT....RHLP.VCKV.TDL.RE.AP....P...............G.R | |
Retrocopy | QFASLGLRFNKIVHSSMTHPIETTGFSNRHLPNVCKVHTDLGRE-APSSSQPGSVSLEAATGHVVKMGVR |
Parental | IEAAFRNYIHRA-DARQEEDSYEIFICHANVIR |
IEAA.RN.I.R..DA.Q..D..EIF.CHANVIR | |
Retrocopy | IEAALRNCIPRG<DAKQGDDN*EIFRCHANVIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 6 .61 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .71 RPM |
SRP007412_heart | 0 .00 RPM | 5 .54 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .21 RPM |
SRP007412_liver | 0 .00 RPM | 13 .38 RPM |
SRP007412_testis | 6 .37 RPM | 6 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3363 |
Pan troglodytes | retro_ptro_2286 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013437 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011867 | 2 retrocopies | |
Felis catus | ENSFCAG00000002503 | 2 retrocopies | |
Homo sapiens | ENSG00000247077 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013646 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015466 | 1 retrocopy |
retro_mmul_2101 ,
|
Mustela putorius furo | ENSMPUG00000002639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005657 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037443 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026764 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010653 | 1 retrocopy |