Parental gene:

PGAM5, ENSSSCG00000026764

Aliases:None
Description:phosphoglycerate mutase family member 5 [Source:HGNC Symbol;Acc:28763]
Organism:Pig (Sus scrofa)
Coordinates:GL896438.1:14132..18151(-)


>ENSSSCG00000026764
CAGAAAGACTGTCTCTCCTATTTCAACATTAGGCGAGAACCTCTATCCGAACCCGGAGAAGAAGAGCTGGCGTCCAGGCT
GGACCACTACAAAGCCAAGGCCACTCGGCACATCTTCCTCATCAGGCACTCCCAGTACCATGTGGACGCCTCCCTGGAGA
AGGACCGCACGCTGACACCCCTGGGTCGTGAGCAGGCTGAGCTAACTGGTCTCCGTCTTGCAAGCTTGGGGTTGAAATTT
AATAAAATCGTCCATTCCTCCATGACCCGCGCCATAGAAACCACTGACATCATCAGCAAACACCTGCCAGGCGTCTGCAG
GGTCAGCACAGACCTGCTCAGGGAGGGCGCCCCCATCGAGCCCGATCCCCCAGTGTGGGCAGGCAGCCCCTCTGCTGTGC
AGTATTACGAAGATGGCGCGAGGATCGAGGCTGCCTTCCGGAACTACATCCACCGGGCTGATGCCAAGCAGCAGGAGGAC
AGTTATGAGATCTTCATCTGCCACGCCAATGTCATCCGTTACATCGTGTGCCGAGTGACCCCCGCCCTGAGCCACAGCCC
CAAGTCACAGAGAGCCCTGCACATGGAGGGCCAGAGCATCACCCACCTGGTGGTCCGGCCAGATGGCCGCGTGGCGCTCA
GGGCCCTCGGGGACACAGGGTTCATGCCTCCTGACAAGATCTCCCGCTCCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 24 .69 RPM
SRP014902_testis 28 .57 RPM
SRP018856_adipose 17 .68 RPM
SRP018288_kidney 15 .27 RPM
SRP018288_lung 20 .26 RPM
SRP018288_liver 6 .24 RPM
SRP018288_heart 17 .34 RPM
SRP035408_liver 6 .96 RPM
SRP035408_brain 9 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013437 ortholog_one2one 2 retrogenes
retro_amel_1052, retro_amel_173,
Choloepus hoffmanni ENSCHOG00000011867 ortholog_one2one 2 retrogenes
retro_chof_1762, retro_chof_2590,
Felis catus ENSFCAG00000002503 ortholog_one2many 2 retrogenes
retro_fcat_800, retro_fcat_960,
Homo sapiens ENSG00000247077 ortholog_one2one 1 retrogene
retro_hsap_3363,
Myotis lucifugus ENSMLUG00000013646 ortholog_one2one 1 retrogene
retro_mluc_1270,
Macaca mulatta ENSMMUG00000015466 ortholog_one2one 1 retrogene
retro_mmul_2101,
Mustela putorius furo ENSMPUG00000002639 ortholog_one2one 1 retrogene
retro_mputfur_684,
Pan troglodytes ENSPTRG00000005657 ortholog_one2one 1 retrogene
retro_ptro_2286,
Rattus norvegicus ENSRNOG00000037443 ortholog_one2one 1 retrogene
retro_rnor_1597,
Tursiops truncatus ENSTTRG00000010653 ortholog_one2one 1 retrogene
retro_ttru_208,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_821 50.77 53.91
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Download FASTA sequences of all ENSSSCG00000026764 retrocopies