RetrogeneDB ID: | retro_hsap_3363 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:109220643..109221075(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253224 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM5 | ||
Ensembl ID: | ENSG00000247077 | ||
Aliases: | PGAM5, BXLBV68 | ||
Description: | phosphoglycerate mutase family member 5 [Source:HGNC Symbol;Acc:28763] |
Percent Identity: | 70.34 % |
Parental protein coverage: | 56.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AGGDAEPRPAEPPAWAGGARPGPGVWDPNWDRREPLSLINVRKRNVESGEEELASKLDHYKAKATRHIFL |
AG....PR.AE.PAWA.G.RP...VWDP..DR.EPLSL.N.RKRNVESGE..LAS.LDH..AKAT.H..L | |
Retrocopy | AGTVGKPRAAEAPAWAWGTRPSLSVWDPDRDRQEPLSLNNLRKRNVESGE*-LASRLDHCRAKATGHTLL |
Parental | IRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVST |
...SQYHVDGSLEKD..L.PLGREQ.ELTGLRLASLGL.FNKIVHSSMT..IETT....RHLP.V.K..T | |
Retrocopy | VMRSQYHVDGSLEKDCSLNPLGREQVELTGLRLASLGLRFNKIVHSSMTHPIETTGFSNRHLPSVFKGRT |
Parental | DLLRE |
DL.RE | |
Retrocopy | DLGRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 20 .53 RPM |
bodymap2_adrenal | 0 .00 RPM | 23 .83 RPM |
bodymap2_brain | 0 .00 RPM | 17 .63 RPM |
bodymap2_breast | 0 .00 RPM | 16 .19 RPM |
bodymap2_colon | 0 .00 RPM | 17 .44 RPM |
bodymap2_heart | 0 .00 RPM | 16 .71 RPM |
bodymap2_kidney | 0 .00 RPM | 25 .95 RPM |
bodymap2_liver | 0 .00 RPM | 32 .43 RPM |
bodymap2_lung | 0 .00 RPM | 15 .07 RPM |
bodymap2_lymph_node | 0 .00 RPM | 23 .66 RPM |
bodymap2_ovary | 0 .00 RPM | 25 .64 RPM |
bodymap2_prostate | 0 .00 RPM | 19 .71 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 44 .20 RPM |
bodymap2_testis | 0 .06 RPM | 27 .53 RPM |
bodymap2_thyroid | 0 .00 RPM | 23 .54 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 21 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2286 |
Macaca mulatta | retro_mmul_2101 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013437 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011867 | 2 retrocopies | |
Felis catus | ENSFCAG00000002503 | 2 retrocopies | |
Homo sapiens | ENSG00000247077 | 1 retrocopy |
retro_hsap_3363 ,
|
Myotis lucifugus | ENSMLUG00000013646 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015466 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005657 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037443 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026764 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010653 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |