RetrogeneDB ID: | retro_mluc_1768 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429905:3043978..3045063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000000520 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2R5A | ||
Ensembl ID: | ENSMLUG00000009549 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.41 % |
Parental protein coverage: | 74.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QKRSQGSSQFRSQGSPVELQPLPQLKDATSNEQQELFCQKLQQCCVLFDFMDSVSDLKSKEIKRATLNEL |
.KRSQGS.QFR.QGSP.E.QPLPQLKDATSNEQQEL.CQKLQQCCVLFDFMDSVSDLKSKEIKRA.LNEL | |
Retrocopy | EKRSQGSWQFRRQGSPEERQPLPQLKDATSNEQQELCCQKLQQCCVLFDFMDSVSDLKSKEIKRAALNEL |
Parental | VEYV-STNRGVIVESAYSDIVKMISANIFRTLPPSDNPDFDPEEDEPTLEASWPHIQLVYEF-FLRFLES |
VEYV.ST.RGVIVESAYSDIV.MISANIFRTLPPSDNPDFDPE.DEPTL.ASWPHIQ.VYEF.FLRFLES | |
Retrocopy | VEYV>STSRGVIVESAYSDIVRMISANIFRTLPPSDNPDFDPE-DEPTLGASWPHIQSVYEF>FLRFLES |
Parental | PDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFIYETEH |
PDFQPSIAKRY..QKFVQQ.LELFDSE.PRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRF.YETEH | |
Retrocopy | PDFQPSIAKRYVGQKFVQQILELFDSEVPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFTYETEH |
Parental | FNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIR |
FNGVAELLEILGSIINGFALPLK.EHKQF.MKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPV.R | |
Retrocopy | FNGVAELLEILGSIINGFALPLKTEHKQFRMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVTR |
Parental | GLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNEYILS |
GLLKFWPKTCSQKEVMFLGE.EEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQ.AERALYFWNNEYILS | |
Retrocopy | GLLKFWPKTCSQKEVMFLGETEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQIAERALYFWNNEYILS |
Parental | LIEENIDKILPIMF |
LIEENIDKILPIMF | |
Retrocopy | LIEENIDKILPIMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000009549 | 1 retrocopy |
retro_mluc_1768 ,
|
Mus musculus | ENSMUSG00000026626 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010468 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000068 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013786 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011662 | 1 retrocopy |