>retro_mmus_3390
TTCTTGGAGAGTGCTGATTTCCAGCCCAGCATTGCAAAGCGATACATTGATCAGAAGTTGTCCAACAGCTCCTGGAGCTT
TTTGATAGTGAAGATCCACAGGAGTGCGACTTCCTGAAGACCGTCCTGCATTGGATTTATGGCAAGTTCCTTGGCCTGAG
AGCGTTCATCAGAAAACAGTTTAACAACATTTTCCTCAGGTTTATATATGAAACGGAACATTTCAATGGTGTGGCTGAGC
TCCTTGAAATATTGGGAAGTATCATCAATGGCTTTGCATTGCCAGTGAAAGCAGAGCATAAGCAGTTTCTAATGAAGGTT
CTTATTCCTACGCATACTGCAAAAGGATTGGCCTTGTTTCATGCACAGCTGGCGTACTGTGTTGTACAGTTCCTGGAGAA
AGACACAACGCTGACAGAGCTTTTTGATCAGAGGACTGCTGAAATTTCAGCCAAAAACATGCAGTCAGAAAGAGGTGATG
TTTTAGGAGAAATTGAAGATATCTTAGATGTCAGTGAACCAACACAATTCAAAAAAATTGAAGAGCCGCTTTTTAAGCAG
ATATCCAAGTGTGTCTCCAGCTCATTTCTAGGTTGCAGAAAGTGTACTGTACTTCTGGAATAATGAATATATTCTTAGTT
TGATTGAAGAGAATATTGATAAAATCCTGCCAATCATGTTTGCCAGCTTGTATAAAATTTCCAAAGAACACTGGAATCAG
CCTATTGTAGCACTGGTGTACAATGTGCTGAAAACCCTCATGGAGATGAACGGCAAGCTTTTTGACAACCTTACTAGTTC
CTACAAAGCCGAAAGACAGAGAGAGAAGAAGAAAGAACTGGAACGGGAAGAGTTATGGAAAAAACTAGAAGAGCTGCAGC
TGAAGAAGACTCTAGAGAAACAGAACAATGCTTAAAACATGAACAGTATTCAGAGCAGTACCAGTGCCAAA
ORF - retro_mmus_3390 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.58 % |
Parental protein coverage: |
65.43 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | FLESPDFQPSIAKRYIDQKF-VQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFI |
| FLES.DFQPSIAKRYIDQK..VQQLLELFDSEDP.E.DFLKTVLH.IYGKFLGLRAFIRKQ.NNIFLRFI |
Retrocopy | FLESADFQPSIAKRYIDQKL<VQQLLELFDSEDPQECDFLKTVLHWIYGKFLGLRAFIRKQFNNIFLRFI |
|
Parental | YETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLT |
| YETEHFNGVAELLEILGSIINGFALP.KAEHKQFLMKVLIP.HTAKGLALFHAQLAYCVVQFLEKDTTLT |
Retrocopy | YETEHFNGVAELLEILGSIINGFALPVKAEHKQFLMKVLIPTHTAKGLALFHAQLAYCVVQFLEKDTTLT |
|
Parental | EP-VIRGLLKFWPKTCSQKEVMF-LGEIEEILDVIEPTQF-KKIEEPLFKQISKCVSSSHFQVAERALYF |
| E...IRGLLKF.PKTCSQKEVMF.LGEIE.ILDV.EPTQF.KK............VS..HF.VAE..LYF |
Retrocopy | EL>LIRGLLKFQPKTCSQKEVMF<LGEIEDILDVSEPTQF>KKLKSRFLSRYPS-VSPAHF*VAESVLYF |
|
Parental | WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQRE |
| WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQ.IVALVYNVLKTLMEMNGKLFD.LTSSYKAERQRE |
Retrocopy | WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQPIVALVYNVLKTLMEMNGKLFDNLTSSYKAERQRE |
|
Parental | KKKELEREELWKKLEELQLKKALEKQNNAYNMHSIRSSTSAK |
| KKKELEREELWKKLEELQLKK.LEKQNNA.NM.SI.SSTSAK |
Retrocopy | KKKELEREELWKKLEELQLKKTLEKQNNA*NMNSIQSSTSAK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
59 .72 RPM |
SRP007412_cerebellum |
0 .00 RPM |
30 .39 RPM |
SRP007412_heart |
0 .00 RPM |
71 .32 RPM |
SRP007412_kidney |
0 .04 RPM |
81 .29 RPM |
SRP007412_liver |
0 .11 RPM |
112 .81 RPM |
SRP007412_testis |
0 .46 RPM |
15 .51 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_3390 was not detected
No EST(s) were mapped for retro_mmus_3390 retrocopy.
No TSS is located nearby retro_mmus_3390 retrocopy 5' end.
retro_mmus_3390 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_3390 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
10 retrocopies.