>retro_mmus_2421
TTCTTGGAGAGTGCTGATTTCCAGCCCAGCATTGCAAAGCGATACATTGATCAGAAGTTGTCCATCAGCTCCTGGAGCTT
TTTGATAGTGAAGATCCACAGGAGTGCGACTTCCTGAAGACCGTCCTGCATTGGATTTATGGCAAGTTCCTTGGCCTGAG
AGCATTCATCAGAAAACAGTTTAACAACATTTTCCTCAGGTTTATATATGAAACGGAACATTTCAATGGTGTGGCTTAGC
TCCTTGAAATATTGGGAAGTATCATCAATGGCTTTGCATTGCCAGTGAAAGCAGAGCATAAGCAGTTTCTAATGAAGGTT
TTTATTCCTACGCATACTGCAAAAGGATTGGCCTTGTTTCATGCACAGCTGGCGTACTGTGTTGTACAGTTCCTGGAGAA
AGACACAACGCTGACAGAGCTTTTTGATCAGAGGACTGCTGAAATTTCAGCCAAAAACATGCAGTCAGAAAGAGGTGATG
TTTTAGGAGAAATTGAAGATATCTTAGATGTCATTGAACCAACACAATTCAAAAAAATTGAAGAGCCGCTTTTTAAGCAG
ATATCCAAGTGCGTCTCCAGCTCATTTCTAGGTTGCAGAAAGTGTACTGTACTTCTGGAATAATGAATATATTCTTAGTT
TGATTGAAGAGAATATTGATAAAATCCTGCCAATCATGTTTGCCAGCTTGTATAAAATTTCCAAAGAACACTGGAATCAG
CCTATTGTAGCACTGGTGTACAATGTGCTGAAAACCCTCATGGAGATGAACGGCAAGCTTTTTGACAACCTTACTAGTTC
CTACAAAGCCGAAAGACAGAGAGAGAAGAAAGAACTGGAACGGGAAGAGTTATGGAAAAAACTAGAAGAGCTGCAGCTGA
AGAAGACTAGAGAAACAGAA
ORF - retro_mmus_2421 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.62 % |
Parental protein coverage: |
62.14 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | FLESPDFQPSIAKRYIDQKF-VQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFI |
| FLES.DFQPSIAKRYIDQK..V.QLLELFDSEDP.E.DFLKTVLH.IYGKFLGLRAFIRKQ.NNIFLRFI |
Retrocopy | FLESADFQPSIAKRYIDQKL<VHQLLELFDSEDPQECDFLKTVLHWIYGKFLGLRAFIRKQFNNIFLRFI |
|
Parental | YETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLT |
| YETEHFNGVA.LLEILGSIINGFALP.KAEHKQFLMKV.IP.HTAKGLALFHAQLAYCVVQFLEKDTTLT |
Retrocopy | YETEHFNGVA*LLEILGSIINGFALPVKAEHKQFLMKVFIPTHTAKGLALFHAQLAYCVVQFLEKDTTLT |
|
Parental | EP-VIRGLLKFWPKTCSQKEVMF-LGEIEEILDVIEPTQF-KKIEEPLFKQISKCVSSSHFQVAERALYF |
| E...IRGLLKF.PKTCSQKEVMF.LGEIE.ILDVIEPTQF.KK.............S..HF.VAE..LYF |
Retrocopy | EL>LIRGLLKFQPKTCSQKEVMF<LGEIEDILDVIEPTQF>KKLKSRFLSRYPSA-SPAHF*VAESVLYF |
|
Parental | WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQRE |
| WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQ.IVALVYNVLKTLMEMNGKLFD.LTSSYKAERQRE |
Retrocopy | WNNEYILSLIEENIDKILPIMFASLYKISKEHWNQPIVALVYNVLKTLMEMNGKLFDNLTSSYKAERQRE |
|
Parental | KKKELEREELWKKLEELQLKKALEKQ |
| .KKELEREELWKKLEELQLKK..E.. |
Retrocopy | -KKELEREELWKKLEELQLKKTRETE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
59 .72 RPM |
SRP007412_cerebellum |
0 .00 RPM |
30 .39 RPM |
SRP007412_heart |
0 .00 RPM |
71 .32 RPM |
SRP007412_kidney |
0 .02 RPM |
81 .29 RPM |
SRP007412_liver |
0 .03 RPM |
112 .81 RPM |
SRP007412_testis |
0 .05 RPM |
15 .51 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2421 was not detected
No EST(s) were mapped for retro_mmus_2421 retrocopy.
No TSS is located nearby retro_mmus_2421 retrocopy 5' end.
retro_mmus_2421 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2421 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
10 retrocopies.