RetrogeneDB ID: | retro_mmus_2410 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:145746445..145747251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082334 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppp2r5a | ||
Ensembl ID: | ENSMUSG00000026626 | ||
Aliases: | Ppp2r5a, PR61alpha | ||
Description: | protein phosphatase 2, regulatory subunit B (B56), alpha isoform [Source:MGI Symbol;Acc:MGI:2388479] |
Percent Identity: | 86.81 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | FLESPDFQPSIAKRYIDQKF-VQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFI |
FLES.DFQ.SIAKRYIDQK..VQ.LLELFDSEDPRERDFLKTVL..IYGKFLGLRAFIRKQINNIFLRFI | |
Retrocopy | FLESADFQSSIAKRYIDQKL<VQLLLELFDSEDPRERDFLKTVLNQIYGKFLGLRAFIRKQINNIFLRFI |
Parental | YETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLT |
YETEHF.GVAELLEILGSIINGFALP.KAEHKQFLMKV.IPMHTAKGLALF.AQLAYCVVQFLEK.TTLT | |
Retrocopy | YETEHFSGVAELLEILGSIINGFALPVKAEHKQFLMKVFIPMHTAKGLALFYAQLAYCVVQFLEKATTLT |
Parental | EPVIRGLLKFWPKTCSQKEVMF-LGEIEEILDVIEPTQF-KKIEEPLFKQISKCVSSSHFQVAERALYFW |
EPVIRGLLKF.PKTCSQKEVMF.LG.IE..LDVIEPTQF.KK............VS..HFQVAERAL.FW | |
Retrocopy | EPVIRGLLKFRPKTCSQKEVMF<LGKIEDVLDVIEPTQF>KKLKSCFLSRYPS-VSPAHFQVAERAL*FW |
Parental | NNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYK |
NNEYILSLIEENIDKILPIMFASLYKISKEHWNQ..VALVYNVLKTLMEMNGKLFD.LTSSYK | |
Retrocopy | NNEYILSLIEENIDKILPIMFASLYKISKEHWNQPTVALVYNVLKTLMEMNGKLFDNLTSSYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 59 .72 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .39 RPM |
SRP007412_heart | 0 .00 RPM | 71 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 81 .29 RPM |
SRP007412_liver | 0 .00 RPM | 112 .81 RPM |
SRP007412_testis | 0 .00 RPM | 15 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000009549 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026626 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010468 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000068 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013786 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011662 | 1 retrocopy |