RetrogeneDB ID: | retro_rnor_2107 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:227495350..227496244(-) | ||
Located in intron of: | ENSRNOG00000007866 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppp2r5a | ||
Ensembl ID: | ENSRNOG00000000068 | ||
Aliases: | None | ||
Description: | serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform [Source:RefSeq peptide;Acc:NP_001101361] |
Percent Identity: | 98.66 % |
Parental protein coverage: | 61.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VQQLLELFDSEDPRERDFLKTVLHRIYGKFLGMRAFIRKQTNNIFLRFIYETEHFNGVAELLEILGSIIN |
V..LLELFDSEDP.ERDFLKTVL.RIYGKFLGMRAFIRKQTNNIFLRFIYETEHFNGVAELLEILGSIIN | |
Retrocopy | VFKLLELFDSEDPGERDFLKTVLYRIYGKFLGMRAFIRKQTNNIFLRFIYETEHFNGVAELLEILGSIIN |
Parental | GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVM |
GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVM | |
Retrocopy | GFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVM |
Parental | FLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFAS |
FLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFAS | |
Retrocopy | FLGEIEEILDVIEPTQFKKIEEPLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFAS |
Parental | LYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALE |
LYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALE | |
Retrocopy | LYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALE |
Parental | KQNNAYNMHSILSNTSAQ |
KQNNAYNMHSILSNTSAQ | |
Retrocopy | KQNNAYNMHSILSNTSAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 36 .24 RPM |
SRP017611_kidney | 0 .42 RPM | 88 .55 RPM |
SRP017611_liver | 0 .40 RPM | 89 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000009549 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026626 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010468 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000068 | 1 retrocopy |
retro_rnor_2107 ,
|
Tarsius syrichta | ENSTSYG00000013786 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011662 | 1 retrocopy |