>retro_mmus_2417
TTCTTGGAGAGTGCTGATTTCCAGCCCAGCATTGCAAAGCGATACATTGATCAGAAGTTGTCCAACTGCTCCTGGAGCTT
TTTGATAGTGAAGATCCACGGGAGCGCGACTTCCTGAAGACCGTCCTAAATCAGATTTATGGCAAGTTCCTTGGCCTGAG
AGCGTTCATCAGAAAGCAGATTAACAACATTTTCCTCAGGTTTATATATGAAACGGAACATTTCAGTGGTGTGGCTGAGC
TCCTTGAAATATTGGGAAGTATCATCAATGGCTTTGCATTGCCAGTGAAAGCAGAGCATAAGCAGTTTCTAATGAAGGTT
TTTATTCCTATGCATACTGCAAAAGGATTGGCCTTGTTTTATGCACAGCTGGCGTACTGTGTTGTGCAGTTCCTGGAGAA
AGCCACAACGCTGACAGAGCCGGTGATCAGAGGACTGCTGAAATTTCGGCCAAAAACATGCAGTCAGAAAGAGGTGATGT
TTTAGGAAAAATTGAAGATGTCTTAGATGTCATTGAACCAACACAATTCAAAAAAATTGAAGAGCTGCTTTTTAAGCAGA
TATCCAAGTGTGTCTCCAGCTCATTTCCAGGTTGCAGAAAGAGCACTGTAATTCTGGAATAATGAATATATTCTTAGTTT
GATTGAAGAGAATATAGATAAAATCCTGCCAATCATGTTTGCCAGCTTGTATAAAATTTCCAAAGAACACTGGAATCAGC
CTACTGTAGCACTGGTGTACAATGTGCTGAAAACCCTCATGGAGATGAACGGCAAGCTTTTTGACAACCTTACTAGTTCC
TACAAAGCCGAAAGACAGAGAGAGAAGAAGAAAGAACTGGAACGGGAAGAGTTATGGAAAAAGCTAGAAGAGCTGCAGCT
GAAGAAGGCTCTAGAGAAACAGAACAATGCTTAAAACATGCACAGTATTCAGAGCAGTACCAGTGCCAAA
ORF - retro_mmus_2417 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.47 % |
Parental protein coverage: |
65.43 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | FLESPDFQPSIAKRYIDQKF-VQQLLELFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNIFLRFI |
| FLES.DFQPSIAKRYIDQK..VQ.LLELFDSEDPRERDFLKTVL..IYGKFLGLRAFIRKQINNIFLRFI |
Retrocopy | FLESADFQPSIAKRYIDQKL<VQLLLELFDSEDPRERDFLKTVLNQIYGKFLGLRAFIRKQINNIFLRFI |
|
Parental | YETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMHTAKGLALFHAQLAYCVVQFLEKDTTLT |
| YETEHF.GVAELLEILGSIINGFALP.KAEHKQFLMKV.IPMHTAKGLALF.AQLAYCVVQFLEK.TTLT |
Retrocopy | YETEHFSGVAELLEILGSIINGFALPVKAEHKQFLMKVFIPMHTAKGLALFYAQLAYCVVQFLEKATTLT |
|
Parental | EPVIRGLLKFWPKTCSQKEVMF-LGEIEEILDVIEPTQF-KKIEEPLFKQISKCVSSSHFQVAERALYFW |
| EPVIRGLLKF.PKTCSQKEVMF.LG.IE..LDVIEPTQF.KK............VS..HFQVAERAL.FW |
Retrocopy | EPVIRGLLKFRPKTCSQKEVMF<LGKIEDVLDVIEPTQF>KKLKSCFLSRYPS-VSPAHFQVAERAL*FW |
|
Parental | NNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREK |
| NNEYILSLIEENIDKILPIMFASLYKISKEHWNQ..VALVYNVLKTLMEMNGKLFD.LTSSYKAERQREK |
Retrocopy | NNEYILSLIEENIDKILPIMFASLYKISKEHWNQPTVALVYNVLKTLMEMNGKLFDNLTSSYKAERQREK |
|
Parental | KKELEREELWKKLEELQLKKALEKQNNAYNMHSIRSSTSAK |
| KKELEREELWKKLEELQLKKALEKQNNA.NMHSI.SSTSAK |
Retrocopy | KKELEREELWKKLEELQLKKALEKQNNA*NMHSIQSSTSAK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
59 .72 RPM |
SRP007412_cerebellum |
0 .00 RPM |
30 .39 RPM |
SRP007412_heart |
0 .00 RPM |
71 .32 RPM |
SRP007412_kidney |
0 .00 RPM |
81 .29 RPM |
SRP007412_liver |
0 .00 RPM |
112 .81 RPM |
SRP007412_testis |
0 .00 RPM |
15 .51 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2417 was not detected
No EST(s) were mapped for retro_mmus_2417 retrocopy.
No TSS is located nearby retro_mmus_2417 retrocopy 5' end.
retro_mmus_2417 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2417 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
10 retrocopies.