RetrogeneDB ID:

retro_mluc_823

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429777:9434711..9435096(-)
Located in intron of:ENSMLUG00000023713
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS15A
Ensembl ID:ENSMLUG00000005660
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_823
GTGCACATGAATGTCCTGGCTGATGCTCTCAGGAGTATCAACAATGCTGAAAAGAGAGGCAAATGCTACATTCTTAGTAG
GCCATGCTCCAAAGTCATGCTCCAGTTCCTAACTGTGATGATGCAACACGGTTTCATTGGCAAATTTAAAATTACTGATG
ACTACAGAGCTGGGAAAATTATCATGAACTCACAGGCAGGTTAAACAAGTGTGGAGTAATCAGCCCCAAATTTGATATGC
AACTCAAAGATCTAGAAAAATGGCAGAAAAACCTGCTTCCATCCCATCAATTGGTTTTGTTGTACTGACAACCTCAGCGG
GCTTCATGGGTCATGAAGAAGCAAGTTAAAAACACAAAGGAGGGAAAATCCTGGGAATATTTTTC

ORF - retro_mluc_823 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.34 %
Parental protein coverage: 99.23 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVN-LTGRLN
V.MNVLADAL.SINNAEKRGK...L.RPCSKV...FLTVMM.HG.IG.F.I.DD.RAGKI..N.LTGRLN
RetrocopyVHMNVLADALRSINNAEKRGKCYILSRPCSKVMLQFLTVMMQHGFIGKFKITDDYRAGKIIMN<LTGRLN
ParentalKCGVISPRFDVQLKDLEKWQNNLLPSRQ-FGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
KCGVISP.FD.QLKDLEKWQ.NLLPS.Q..GF.VLTTSAG.M.HEEA..KH.GGKILG.FF
RetrocopyKCGVISPKFDMQLKDLEKWQKNLLPSHQ<IGFVVLTTSAGFMGHEEAS*KHKGGKILGIFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_823 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 168 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207335 retrocopies
Callithrix jacchus ENSCJAG000000200716 retrocopies
Gadus morhua ENSGMOG000000058621 retrocopy
Latimeria chalumnae ENSLACG000000114761 retrocopy
Loxodonta africana ENSLAFG0000002699613 retrocopies
Macropus eugenii ENSMEUG0000000395614 retrocopies
Myotis lucifugus ENSMLUG00000005660 15 retrocopies
Monodelphis domestica ENSMODG000000059206 retrocopies
Otolemur garnettii ENSOGAG0000001319914 retrocopies
Pan troglodytes ENSPTRG000000078232 retrocopies
Rattus norvegicus ENSRNOG000000183205 retrocopies
Tupaia belangeri ENSTBEG0000001362686 retrocopies



Copyright © RetrogeneDB 2014-2017